Wall clock time and date at job start Mon Mar 30 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47448 * 2 1 4 4 F 1.39902 * 109.46926 * 119.99407 * 2 1 3 5 5 C 1.50699 * 109.47214 * 239.99099 * 2 1 3 6 6 C 1.38171 * 120.02521 * 95.00656 * 5 2 1 7 7 C 1.38244 * 120.05436 * 180.30143 * 6 5 2 8 8 C 1.50696 * 119.94465 * 179.70269 * 7 6 5 9 9 C 1.50694 * 109.47377 * 89.99248 * 8 7 6 10 10 H 1.08002 * 119.99899 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00296 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46978 * 59.99912 * 13 11 9 15 15 H 1.48499 * 109.47188 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46976 * 300.00315 * 13 11 9 17 17 C 1.38294 * 120.11199 * 359.44067 * 7 6 5 18 18 C 1.38125 * 120.05036 * 0.55704 * 17 7 6 19 19 C 1.38706 * 120.03077 * 275.02711 * 5 2 1 20 20 O 1.35899 * 120.05784 * 359.95270 * 19 5 2 21 21 H 1.09002 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47246 * 300.00781 * 1 2 3 23 23 H 1.09004 * 109.46792 * 60.00427 * 1 2 3 24 24 H 1.08002 * 119.96962 * 0.02562 * 6 5 2 25 25 H 1.08996 * 109.47057 * 209.99750 * 8 7 6 26 26 H 1.09005 * 109.46844 * 329.99284 * 8 7 6 27 27 H 0.96996 * 120.00401 * 179.97438 * 12 11 9 28 28 H 1.07994 * 119.97164 * 180.26057 * 17 7 6 29 29 H 1.08006 * 120.02441 * 179.70765 * 18 17 7 30 30 H 0.96706 * 114.00065 * 89.99795 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0323 -0.7106 -1.2303 6 6 2.3612 0.0128 -2.3607 7 6 2.8162 -0.6390 -3.4917 8 6 3.1678 0.1518 -4.7254 9 6 4.6218 0.5443 -4.6730 10 1 5.2306 0.2501 -3.8308 11 6 5.1753 1.2780 -5.7008 12 7 4.4342 1.6358 -6.7267 13 14 6.9779 1.7640 -5.6363 14 1 7.8183 0.5412 -5.5754 15 1 7.3243 2.5434 -6.8519 16 1 7.2238 2.5942 -4.4298 17 6 2.9543 -2.0150 -3.4912 18 6 2.6269 -2.7426 -2.3637 19 6 2.1645 -2.0913 -1.2292 20 8 1.8422 -2.8051 -0.1185 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 2.2585 1.0879 -2.3620 25 1 2.9876 -0.4574 -5.6111 26 1 2.5506 1.0491 -4.7699 27 1 4.8234 2.1523 -7.4496 28 1 3.3140 -2.5215 -4.3746 29 1 2.7305 -3.8177 -2.3654 30 1 0.9190 -3.0913 -0.0891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:11 Heat of formation + Delta-G solvation = -87.819453 kcal Electronic energy + Delta-G solvation = -14950.754064 eV Core-core repulsion = 12238.820710 eV Total energy + Delta-G solvation = -2711.933354 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.33077 -39.35810 -36.50177 -33.55950 -32.80422 -30.59866 -29.22524 -26.62540 -23.66907 -23.20744 -21.62950 -19.90429 -17.92637 -16.43033 -16.31763 -15.70109 -15.10019 -14.78259 -14.54191 -14.52735 -13.57378 -13.15475 -12.67144 -12.52901 -12.30648 -11.93981 -11.74432 -11.46416 -11.27988 -11.07010 -10.85489 -10.59716 -10.53160 -9.84571 -9.61007 -9.49606 -8.47537 -8.40527 -7.74398 -6.09426 -4.13849 1.72788 1.85400 3.29697 3.33719 3.37376 4.12156 4.42190 4.53679 4.69418 4.81204 5.02255 5.21804 5.25304 5.39735 5.64018 5.72179 5.91678 5.98458 6.01167 6.21500 6.35196 6.42692 6.86585 6.98052 7.03767 7.32983 7.49290 7.72919 7.86158 7.99806 8.25174 8.91316 9.50602 11.00271 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.006696 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.510139 B = 4180.712751 C = 4336.656933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 H 0.087 0.913 4 F -0.203 7.203 5 C -0.154 4.154 6 C -0.096 4.096 7 C -0.039 4.039 8 C 0.049 3.951 9 C -0.515 4.515 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.103 4.103 18 C -0.146 4.146 19 C 0.090 3.910 20 O -0.490 6.490 21 H 0.062 0.938 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.125 0.875 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -4.652 9.700 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.105 0.895 4 F -0.184 7.184 5 C -0.155 4.155 6 C -0.114 4.114 7 C -0.039 4.039 8 C 0.012 3.988 9 C -0.554 4.554 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.121 4.121 18 C -0.165 4.165 19 C 0.046 3.954 20 O -0.298 6.298 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.143 0.857 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.449 -4.477 9.708 13.030 hybrid contribution 0.606 0.151 -0.147 0.641 sum -6.844 -4.326 9.560 12.528 Atomic orbital electron populations 1.22322 0.94084 1.03161 1.03268 1.20183 0.94304 0.95197 0.80063 0.89474 1.92848 1.90251 1.83354 1.51927 1.20489 1.04923 0.93836 0.96249 1.20797 0.99190 0.99716 0.91734 1.20714 0.92212 0.93762 0.97253 1.18354 0.96928 0.94495 0.89016 1.21028 0.94312 1.34267 1.05749 0.92462 1.25004 0.98145 0.95774 0.95278 1.69941 1.36087 1.38106 1.09144 0.86588 0.84902 0.78732 0.77447 1.20108 1.21166 1.20119 1.21064 0.99232 0.94124 0.97678 1.21322 1.02618 0.99879 0.92672 1.18041 1.02103 0.88865 0.86416 1.84913 1.31876 1.73011 1.40016 0.91883 0.91482 0.90511 0.85736 0.95144 0.95199 0.92707 0.85748 0.86168 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.63 37.16 0.36 -1.52 16 2 C 0.14 1.99 4.06 -27.88 -0.11 1.88 16 3 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 4 F -0.20 -3.34 15.32 2.25 0.03 -3.30 16 5 C -0.15 -2.61 5.05 -104.47 -0.53 -3.14 16 6 C -0.10 -1.81 9.33 -39.60 -0.37 -2.18 16 7 C -0.04 -0.83 5.07 -104.60 -0.53 -1.36 16 8 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 9 C -0.52 -14.23 9.09 -34.44 -0.31 -14.55 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.10 -1.96 9.70 -39.60 -0.38 -2.35 16 18 C -0.15 -2.49 9.99 -39.43 -0.39 -2.88 16 19 C 0.09 1.52 6.59 -39.22 -0.26 1.26 16 20 O -0.49 -7.36 11.63 -19.42 -0.23 -7.58 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 25 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.37 3.81 9.06 45.56 0.41 4.22 16 LS Contribution 268.09 15.07 4.04 4.04 Total: -1.00 -30.77 268.09 -6.14 -36.91 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -2.92 Total: 1.01 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.78 Total: -22.20 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.25 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.23 Total: -7.58 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.03 Total: -3.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.77 -6.14 -36.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.910 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds