Wall clock time and date at job start Mon Mar 30 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47448 * 2 1 4 4 F 1.39902 * 109.46926 * 119.99407 * 2 1 3 5 5 C 1.50699 * 109.47214 * 239.99099 * 2 1 3 6 6 C 1.38171 * 120.02521 * 95.00656 * 5 2 1 7 7 C 1.38244 * 120.05436 * 180.30143 * 6 5 2 8 8 C 1.50696 * 119.94465 * 179.70269 * 7 6 5 9 9 C 1.50694 * 109.47377 * 89.99248 * 8 7 6 10 10 H 1.08002 * 119.99899 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00296 * 179.97438 * 9 8 7 12 12 N 1.31521 * 119.99858 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00406 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46978 * 59.99912 * 13 11 9 15 15 H 1.48499 * 109.47188 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46976 * 300.00315 * 13 11 9 17 17 C 1.38294 * 120.11199 * 359.44067 * 7 6 5 18 18 C 1.38125 * 120.05036 * 0.55704 * 17 7 6 19 19 C 1.38706 * 120.03077 * 275.02711 * 5 2 1 20 20 O 1.35899 * 120.05784 * 359.95270 * 19 5 2 21 21 H 1.09002 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47246 * 300.00781 * 1 2 3 23 23 H 1.09004 * 109.46792 * 60.00427 * 1 2 3 24 24 H 1.08002 * 119.96962 * 0.02562 * 6 5 2 25 25 H 1.08996 * 109.47057 * 209.99750 * 8 7 6 26 26 H 1.09005 * 109.46844 * 329.99284 * 8 7 6 27 27 H 0.96996 * 120.00401 * 179.97438 * 12 11 9 28 28 H 1.07994 * 119.97164 * 180.26057 * 17 7 6 29 29 H 1.08006 * 120.02441 * 179.70765 * 18 17 7 30 30 H 0.96706 * 114.00065 * 89.99795 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0323 -0.7106 -1.2303 6 6 2.3612 0.0128 -2.3607 7 6 2.8162 -0.6390 -3.4917 8 6 3.1678 0.1518 -4.7254 9 6 4.6218 0.5443 -4.6730 10 1 5.2306 0.2501 -3.8308 11 6 5.1753 1.2780 -5.7008 12 7 4.4342 1.6358 -6.7267 13 14 6.9779 1.7640 -5.6363 14 1 7.8183 0.5412 -5.5754 15 1 7.3243 2.5434 -6.8519 16 1 7.2238 2.5942 -4.4298 17 6 2.9543 -2.0150 -3.4912 18 6 2.6269 -2.7426 -2.3637 19 6 2.1645 -2.0913 -1.2292 20 8 1.8422 -2.8051 -0.1185 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 2.2585 1.0879 -2.3620 25 1 2.9876 -0.4574 -5.6111 26 1 2.5506 1.0491 -4.7699 27 1 4.8234 2.1523 -7.4496 28 1 3.3140 -2.5215 -4.3746 29 1 2.7305 -3.8177 -2.3654 30 1 0.9190 -3.0913 -0.0891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:11 Heat of formation + Delta-G solvation = -106.764159 kcal Electronic energy + Delta-G solvation = -14951.575568 eV Core-core repulsion = 12238.820710 eV Total energy + Delta-G solvation = -2712.754858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.53374 -40.73299 -37.86192 -35.32873 -34.25976 -32.30435 -30.44800 -28.41689 -25.14770 -24.79824 -23.03118 -21.32977 -19.20274 -18.52780 -17.60509 -17.12518 -16.42795 -16.37412 -15.96548 -15.78616 -14.99161 -14.61610 -14.50021 -13.65676 -13.56202 -13.48304 -13.15628 -12.99755 -12.90425 -12.65130 -12.40884 -12.25323 -12.00626 -11.55690 -11.40303 -11.10200 -10.61268 -9.79283 -9.25970 -8.21743 -6.35020 0.32447 0.43007 1.39474 1.41163 1.49702 2.37734 2.74805 3.09108 3.32218 3.45815 3.76600 3.90868 4.11946 4.21821 4.32028 4.54321 4.57234 4.77846 4.89431 5.00476 5.08222 5.18181 5.31943 5.33353 5.43980 5.53928 5.72737 5.93331 5.98591 6.17141 6.77384 6.90905 7.33766 8.87023 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.037650 B = 0.006696 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.510139 B = 4180.712751 C = 4336.656933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 H 0.097 0.903 4 F -0.214 7.214 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.070 4.070 8 C 0.059 3.941 9 C -0.533 4.533 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.269 1.269 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.099 3.901 20 O -0.493 6.493 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.007 0.993 26 H 0.009 0.991 27 H 0.266 0.734 28 H 0.124 0.876 29 H 0.148 0.852 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 -5.264 11.413 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.098 3.902 3 H 0.114 0.886 4 F -0.195 7.195 5 C -0.155 4.155 6 C -0.120 4.120 7 C -0.070 4.070 8 C 0.022 3.978 9 C -0.571 4.571 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.204 1.204 16 H -0.194 1.194 17 C -0.130 4.130 18 C -0.160 4.160 19 C 0.055 3.945 20 O -0.305 6.305 21 H 0.090 0.910 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.144 0.856 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.075 0.925 28 H 0.142 0.858 29 H 0.166 0.834 30 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.533 -5.103 11.434 14.612 hybrid contribution 0.551 0.273 -0.599 0.859 sum -6.982 -4.829 10.835 13.765 Atomic orbital electron populations 1.22294 0.91237 1.04186 1.04484 1.20391 0.96497 0.95001 0.78315 0.88557 1.92826 1.90634 1.83644 1.52374 1.20724 1.04003 0.94184 0.96539 1.20786 0.99321 0.99970 0.91873 1.20414 0.95408 0.94541 0.96598 1.18083 0.95586 0.93779 0.90391 1.21357 0.95707 1.34359 1.05630 0.92987 1.25863 1.02641 0.95671 0.94842 1.70054 1.38039 1.38809 1.09843 0.85558 0.79493 0.78599 0.77790 1.19436 1.20384 1.19396 1.21086 0.99700 0.93438 0.98754 1.21528 1.01575 1.01144 0.91781 1.18148 1.00793 0.89000 0.86580 1.84848 1.34144 1.72627 1.38885 0.91002 0.89572 0.90031 0.85613 0.97437 0.97310 0.92474 0.85826 0.83420 0.74186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.63 71.98 0.69 -2.43 16 2 C 0.13 3.52 4.06 29.85 0.12 3.65 16 3 H 0.10 2.35 8.05 -2.39 -0.02 2.33 16 4 F -0.21 -6.47 15.32 44.97 0.69 -5.78 16 5 C -0.15 -4.95 5.05 -19.77 -0.10 -5.05 16 6 C -0.10 -3.81 9.33 22.26 0.21 -3.61 16 7 C -0.07 -2.99 5.07 -19.85 -0.10 -3.09 16 8 C 0.06 3.05 5.10 29.10 0.15 3.20 16 9 C -0.53 -30.15 9.09 25.60 0.23 -29.92 16 10 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 11 C 0.01 0.48 5.46 84.65 0.46 0.94 16 12 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 13 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C -0.11 -4.25 9.70 22.26 0.22 -4.03 16 18 C -0.14 -4.54 9.99 22.37 0.22 -4.32 16 19 C 0.10 3.11 6.59 22.50 0.15 3.26 16 20 O -0.49 -13.11 11.63 -92.41 -1.07 -14.18 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 25 H 0.01 0.41 8.09 -2.39 -0.02 0.39 16 26 H 0.01 0.47 8.08 -2.38 -0.02 0.45 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 29 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.40 6.52 9.06 -74.05 -0.67 5.85 16 Total: -1.00 -66.00 268.09 4.65 -61.35 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.47 Total: 8.77 kcal Atomic # 6 Polarization: -43.66 SS G_CDS: 2.25 Total: -41.41 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.07 Total: -14.18 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.69 Total: -5.78 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.00 4.65 -61.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.416 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds