Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46688 * 2 1 4 4 F 1.39894 * 109.47384 * 239.99650 * 2 1 3 5 5 C 1.50704 * 109.47111 * 119.99521 * 2 1 3 6 6 C 1.38167 * 120.02628 * 95.00141 * 5 2 1 7 7 C 1.38245 * 120.05222 * 179.97438 * 6 5 2 8 8 C 1.38285 * 120.11296 * 0.02562 * 7 6 5 9 9 C 1.38118 * 120.05633 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.02727 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46817 * 264.99923 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99835 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00390 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46946 * 59.99892 * 15 13 11 17 17 H 1.48496 * 109.46933 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46921 * 299.99575 * 15 13 11 19 19 C 1.38709 * 120.02762 * 275.29833 * 5 2 1 20 20 O 1.35904 * 120.05737 * 0.02562 * 19 5 2 21 21 H 1.09004 * 109.46850 * 300.00022 * 1 2 3 22 22 H 1.08991 * 109.46754 * 60.00478 * 1 2 3 23 23 H 1.08993 * 109.46732 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.96895 * 359.97438 * 6 5 2 25 25 H 1.08001 * 119.94014 * 179.97438 * 7 6 5 26 26 H 1.08000 * 119.96837 * 179.97438 * 8 7 6 27 27 H 1.09000 * 109.47318 * 24.99302 * 10 9 8 28 28 H 1.09000 * 109.47161 * 144.99933 * 10 9 8 29 29 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 30 30 H 0.96695 * 113.99952 * 270.29419 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9965 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2306 6 6 2.3612 -2.0509 1.1692 7 6 2.8226 -2.7029 2.2976 8 6 2.9557 -2.0158 3.4902 9 6 2.6284 -0.6756 3.5567 10 6 2.7743 0.0728 4.8566 11 6 1.4529 0.0836 5.5810 12 1 0.5933 -0.4024 5.1436 13 6 1.3409 0.7149 6.8016 14 7 2.3875 1.3072 7.3341 15 14 -0.2969 0.7277 7.6999 16 1 -0.7200 -0.6683 7.9778 17 1 -0.1532 1.4652 8.9807 18 1 -1.3194 1.3960 6.8554 19 6 2.1593 -0.0203 2.4272 20 8 1.8303 1.2967 2.4916 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 2.2577 -2.5897 0.2391 25 1 3.0787 -3.7509 2.2477 26 1 3.3160 -2.5275 4.3704 27 1 3.5243 -0.4184 5.4765 28 1 3.0855 1.0974 4.6531 29 1 2.3087 1.7516 8.1926 30 1 2.5631 1.8953 2.2926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260365227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -86.615325 kcal Electronic energy + Delta-G solvation = -15127.112269 eV Core-core repulsion = 12415.231130 eV Total energy + Delta-G solvation = -2711.881139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.54097 -39.39911 -36.02624 -33.86379 -32.56450 -30.69448 -28.65613 -26.96015 -23.75414 -23.25794 -21.22015 -19.86727 -17.83841 -16.37934 -16.32329 -15.88326 -15.10613 -14.84161 -14.53319 -14.42475 -13.75865 -12.87534 -12.67589 -12.28534 -12.15967 -11.89594 -11.70108 -11.52100 -11.19757 -11.03646 -10.76482 -10.72116 -10.46306 -10.01974 -9.53307 -9.35871 -8.40705 -8.18149 -7.83205 -6.03128 -4.05273 1.70688 1.92905 3.33367 3.36774 3.40743 4.14251 4.47299 4.66121 4.74822 4.87146 5.08056 5.21874 5.32119 5.47478 5.64945 5.74506 5.81892 6.02430 6.19358 6.28257 6.34051 6.57601 6.84897 6.96841 7.03277 7.35379 7.52957 7.72363 7.92177 8.23059 8.34483 8.97518 9.57419 11.07184 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035446 B = 0.007691 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.742360 B = 3639.541177 C = 3942.417594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.142 3.858 3 H 0.088 0.912 4 F -0.216 7.216 5 C -0.157 4.157 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.107 4.107 9 C -0.060 4.060 10 C 0.056 3.944 11 C -0.501 4.501 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.115 3.885 20 O -0.481 6.481 21 H 0.083 0.917 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.027 0.973 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 -3.044 -12.086 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 H 0.106 0.894 4 F -0.197 7.197 5 C -0.158 4.158 6 C -0.135 4.135 7 C -0.148 4.148 8 C -0.126 4.126 9 C -0.060 4.060 10 C 0.020 3.980 11 C -0.540 4.540 12 H 0.073 0.927 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.070 3.930 20 O -0.290 6.290 21 H 0.102 0.898 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.373 -3.165 -11.806 12.229 hybrid contribution -0.420 0.166 0.440 0.630 sum -0.793 -2.999 -11.367 11.782 Atomic orbital electron populations 1.22313 0.93467 1.03445 1.03540 1.20110 0.94921 0.95054 0.79293 0.89409 1.92772 1.90440 1.83634 1.52812 1.20394 1.05141 0.95804 0.94446 1.20595 1.01022 0.93327 0.98585 1.21039 1.01254 0.99488 0.93057 1.21083 1.00155 0.93917 0.97398 1.21054 0.93259 0.94654 0.97051 1.18220 0.97869 0.94917 0.87028 1.20925 0.95139 1.34654 1.03243 0.92725 1.24974 0.96656 0.95328 0.97344 1.69939 1.29257 1.36120 1.18331 0.86596 0.84073 0.78183 0.78836 1.20249 1.21244 1.20155 1.18009 0.99058 0.84768 0.91182 1.84906 1.38262 1.13233 1.92619 0.89816 0.91748 0.91687 0.86278 0.86514 0.85879 0.95464 0.95124 0.92852 0.76666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.63 37.16 0.36 -1.90 16 2 C 0.14 2.06 3.90 -27.88 -0.11 1.95 16 3 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 4 F -0.22 -3.23 16.09 2.25 0.04 -3.19 16 5 C -0.16 -2.67 5.10 -104.47 -0.53 -3.20 16 6 C -0.12 -1.91 9.40 -39.60 -0.37 -2.28 16 7 C -0.13 -2.13 10.04 -39.56 -0.40 -2.53 16 8 C -0.11 -2.04 9.68 -39.61 -0.38 -2.43 16 9 C -0.06 -1.28 5.08 -104.47 -0.53 -1.81 16 10 C 0.06 1.44 4.82 -29.03 -0.14 1.30 16 11 C -0.50 -14.17 9.09 -34.44 -0.31 -14.48 16 12 H 0.05 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 C 0.11 2.22 6.65 -39.22 -0.26 1.96 16 20 O -0.48 -8.94 11.79 -19.44 -0.23 -9.17 16 21 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.12 1.72 7.48 -52.49 -0.39 1.33 16 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 28 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.38 5.25 9.06 45.56 0.41 5.67 16 LS Contribution 267.47 15.07 4.03 4.03 Total: -1.00 -31.01 267.47 -6.08 -37.09 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.85 Total: 2.05 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -2.78 Total: -21.87 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.23 Total: -9.17 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.01 -6.08 -37.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.527 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds