Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46688 * 2 1 4 4 F 1.39894 * 109.47384 * 239.99650 * 2 1 3 5 5 C 1.50704 * 109.47111 * 119.99521 * 2 1 3 6 6 C 1.38167 * 120.02628 * 95.00141 * 5 2 1 7 7 C 1.38245 * 120.05222 * 179.97438 * 6 5 2 8 8 C 1.38285 * 120.11296 * 0.02562 * 7 6 5 9 9 C 1.38118 * 120.05633 * 359.97438 * 8 7 6 10 10 C 1.50706 * 120.02727 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46817 * 264.99923 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99835 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00390 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46946 * 59.99892 * 15 13 11 17 17 H 1.48496 * 109.46933 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46921 * 299.99575 * 15 13 11 19 19 C 1.38709 * 120.02762 * 275.29833 * 5 2 1 20 20 O 1.35904 * 120.05737 * 0.02562 * 19 5 2 21 21 H 1.09004 * 109.46850 * 300.00022 * 1 2 3 22 22 H 1.08991 * 109.46754 * 60.00478 * 1 2 3 23 23 H 1.08993 * 109.46732 * 180.02562 * 1 2 3 24 24 H 1.07993 * 119.96895 * 359.97438 * 6 5 2 25 25 H 1.08001 * 119.94014 * 179.97438 * 7 6 5 26 26 H 1.08000 * 119.96837 * 179.97438 * 8 7 6 27 27 H 1.09000 * 109.47318 * 24.99302 * 10 9 8 28 28 H 1.09000 * 109.47161 * 144.99933 * 10 9 8 29 29 H 0.96992 * 120.00038 * 179.97438 * 14 13 11 30 30 H 0.96695 * 113.99952 * 270.29419 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9965 -0.6595 -1.1422 5 6 2.0324 -0.7103 1.2306 6 6 2.3612 -2.0509 1.1692 7 6 2.8226 -2.7029 2.2976 8 6 2.9557 -2.0158 3.4902 9 6 2.6284 -0.6756 3.5567 10 6 2.7743 0.0728 4.8566 11 6 1.4529 0.0836 5.5810 12 1 0.5933 -0.4024 5.1436 13 6 1.3409 0.7149 6.8016 14 7 2.3875 1.3072 7.3341 15 14 -0.2969 0.7277 7.6999 16 1 -0.7200 -0.6683 7.9778 17 1 -0.1532 1.4652 8.9807 18 1 -1.3194 1.3960 6.8554 19 6 2.1593 -0.0203 2.4272 20 8 1.8303 1.2967 2.4916 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5137 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 2.2577 -2.5897 0.2391 25 1 3.0787 -3.7509 2.2477 26 1 3.3160 -2.5275 4.3704 27 1 3.5243 -0.4184 5.4765 28 1 3.0855 1.0974 4.6531 29 1 2.3087 1.7516 8.1926 30 1 2.5631 1.8953 2.2926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365227.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -105.907486 kcal Electronic energy + Delta-G solvation = -15127.948840 eV Core-core repulsion = 12415.231130 eV Total energy + Delta-G solvation = -2712.717710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.69228 -40.83307 -37.44744 -35.66999 -34.17079 -32.32127 -29.94411 -28.81294 -25.35392 -24.83914 -22.64186 -21.33204 -19.24718 -18.52379 -17.58795 -17.26498 -16.48792 -16.41019 -16.14892 -15.70841 -15.13188 -14.56302 -14.22679 -13.74305 -13.56491 -13.35447 -13.20519 -13.05184 -12.82542 -12.61410 -12.47775 -12.24083 -12.02745 -11.65448 -11.55225 -10.99317 -10.59376 -9.58116 -9.35854 -8.19965 -6.30872 0.32607 0.48478 1.37964 1.40544 1.48664 2.39093 2.77219 3.11242 3.40560 3.41578 3.72954 3.96816 4.06945 4.22935 4.25362 4.50955 4.61652 4.77291 4.90443 5.01186 5.11583 5.17969 5.27899 5.35227 5.54063 5.56771 5.74659 5.91092 5.99924 6.19017 6.78763 6.94229 7.36106 8.89408 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035446 B = 0.007691 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.742360 B = 3639.541177 C = 3942.417594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 H 0.103 0.897 4 F -0.215 7.215 5 C -0.156 4.156 6 C -0.112 4.112 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.097 4.097 10 C 0.068 3.932 11 C -0.518 4.518 12 H 0.045 0.955 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.960 3.040 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.271 1.271 19 C 0.107 3.893 20 O -0.496 6.496 21 H 0.068 0.932 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.122 0.878 27 H 0.002 0.998 28 H 0.008 0.992 29 H 0.265 0.735 30 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.911 -3.950 -13.639 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.108 3.892 3 H 0.121 0.879 4 F -0.196 7.196 5 C -0.157 4.157 6 C -0.129 4.129 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.097 4.097 10 C 0.031 3.969 11 C -0.556 4.556 12 H 0.064 0.936 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.785 3.215 16 H -0.194 1.194 17 H -0.203 1.203 18 H -0.197 1.197 19 C 0.062 3.938 20 O -0.308 6.308 21 H 0.087 0.913 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.171 0.829 26 H 0.140 0.860 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.400 -4.070 -13.373 14.048 hybrid contribution -0.050 0.427 0.843 0.946 sum -1.449 -3.643 -12.530 13.129 Atomic orbital electron populations 1.22279 0.92446 1.03669 1.04008 1.20174 0.95625 0.95364 0.78055 0.87898 1.92774 1.90516 1.83730 1.52603 1.20641 1.04280 0.96269 0.94516 1.21004 0.99344 0.93071 0.99524 1.21359 0.99717 1.01011 0.91664 1.21177 1.00512 0.93203 0.98835 1.20835 0.96930 0.95878 0.96087 1.17903 0.96039 0.94030 0.88944 1.21219 0.95958 1.34544 1.03871 0.93620 1.25838 1.00317 0.94865 0.98188 1.70053 1.31321 1.36827 1.18802 0.85572 0.79601 0.78597 0.77732 1.19350 1.20333 1.19651 1.18059 0.99188 0.85036 0.91493 1.84839 1.39551 1.13522 1.92847 0.91307 0.89310 0.91620 0.83617 0.82854 0.86001 0.97926 0.97336 0.92622 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.63 71.99 0.69 -3.31 16 2 C 0.14 3.78 3.90 29.85 0.12 3.89 16 3 H 0.10 2.42 7.70 -2.39 -0.02 2.40 16 4 F -0.22 -5.73 16.09 44.97 0.72 -5.01 16 5 C -0.16 -5.01 5.10 -19.77 -0.10 -5.11 16 6 C -0.11 -3.29 9.40 22.25 0.21 -3.08 16 7 C -0.12 -3.61 10.04 22.28 0.22 -3.39 16 8 C -0.12 -4.51 9.68 22.25 0.22 -4.29 16 9 C -0.10 -4.25 5.08 -19.77 -0.10 -4.35 16 10 C 0.07 3.61 4.82 29.10 0.14 3.75 16 11 C -0.52 -30.08 9.09 25.60 0.23 -29.85 16 12 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 15 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 C 0.11 4.13 6.65 22.51 0.15 4.28 16 20 O -0.50 -18.54 11.79 -92.47 -1.09 -19.63 16 21 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.15 3.56 7.48 -2.91 -0.02 3.54 16 25 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 26 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 27 H 0.00 0.14 8.05 -2.39 -0.02 0.12 16 28 H 0.01 0.47 7.70 -2.39 -0.02 0.45 16 29 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.40 11.11 9.06 -74.06 -0.67 10.44 16 Total: -1.00 -66.95 267.47 4.66 -62.29 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.47 Total: 11.80 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 2.24 Total: -40.64 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.28 Total: -55.91 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.09 Total: -19.63 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.72 Total: -5.01 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -66.95 4.66 -62.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365227.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.615 kcal (2) G-P(sol) polarization free energy of solvation -66.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds