Wall clock time and date at job start Mon Mar 30 2020 03:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35464 * 117.00183 * 2 1 4 4 N 1.32562 * 119.63425 * 180.02562 * 3 2 1 5 5 C 1.32407 * 119.47445 * 180.02562 * 4 3 2 6 6 C 1.38744 * 118.80168 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.37290 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47354 * 205.00520 * 7 6 5 9 9 C 1.50703 * 109.46886 * 325.00448 * 7 6 5 10 10 H 1.07997 * 120.00606 * 359.97438 * 9 7 6 11 11 C 1.37883 * 119.99615 * 179.97438 * 9 7 6 12 12 N 1.31508 * 120.00165 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 119.99951 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.46740 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47330 * 119.99918 * 13 11 9 16 16 H 1.48499 * 109.47337 * 240.00458 * 13 11 9 17 17 C 1.52998 * 109.47070 * 85.00090 * 7 6 5 18 18 N 1.46905 * 109.46978 * 65.00154 * 17 7 6 19 19 N 1.32165 * 119.25164 * 0.25680 * 6 5 4 20 20 N 1.28741 * 120.46288 * 359.48207 * 19 6 5 21 21 H 1.09004 * 109.47001 * 300.00424 * 1 2 3 22 22 H 1.09002 * 109.47036 * 59.99682 * 1 2 3 23 23 H 1.09000 * 109.47731 * 180.02562 * 1 2 3 24 24 H 1.07998 * 120.59816 * 179.97438 * 5 4 3 25 25 H 0.96996 * 120.00304 * 179.97438 * 12 11 9 26 26 H 1.09002 * 109.47288 * 305.00054 * 17 7 6 27 27 H 1.08995 * 109.47151 * 185.00114 * 17 7 6 28 28 H 1.00901 * 110.99869 * 180.02562 * 18 17 7 29 29 H 1.00896 * 110.99543 * 303.95346 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 3.3682 1.2679 -0.0005 5 6 3.9661 2.4493 0.0000 6 6 3.1831 3.5947 0.0005 7 6 3.8264 4.9575 0.0017 8 1 3.1392 5.6833 0.4363 9 6 5.0931 4.9142 0.8170 10 1 5.4013 3.9923 1.2876 11 6 5.8587 6.0518 0.9621 12 7 5.4838 7.1743 0.3887 13 14 7.4285 5.9984 1.9733 14 1 7.6257 4.6275 2.5091 15 1 8.5831 6.3657 1.1147 16 1 7.3242 6.9596 3.1004 17 6 4.1583 5.3660 -1.4349 18 7 2.9136 5.5245 -2.1988 19 7 1.8667 3.4771 0.0057 20 7 1.3153 2.3137 0.0001 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 5.0437 2.5200 0.0000 25 1 6.0221 7.9746 0.4910 26 1 4.7738 4.5952 -1.8989 27 1 4.7028 6.3101 -1.4275 28 1 3.1061 5.7939 -3.1520 29 1 2.3597 4.6817 -2.1665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434141.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:23 Heat of formation + Delta-G solvation = 16.528043 kcal Electronic energy + Delta-G solvation = -15256.685811 eV Core-core repulsion = 12601.490017 eV Total energy + Delta-G solvation = -2655.195794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.95682 -39.84959 -37.36894 -36.02344 -34.20301 -33.23928 -30.05618 -28.73696 -26.37532 -26.20196 -25.09619 -22.08682 -20.23320 -19.77443 -18.36080 -17.76114 -17.13028 -16.44823 -15.99135 -15.81924 -15.62741 -15.42572 -15.19941 -13.94199 -13.65431 -13.18561 -13.13457 -12.99417 -12.94974 -12.70131 -12.54513 -12.31813 -12.07870 -11.66527 -11.32220 -10.60847 -10.25322 -10.19090 -9.38642 -8.12119 -6.29473 -0.53635 -0.21810 1.35682 1.48915 1.53110 1.62322 2.39293 2.46003 2.68782 3.03559 3.18133 3.57924 3.87592 4.00973 4.16121 4.33881 4.39807 4.65704 4.72873 4.86155 4.97948 5.35716 5.50529 5.69665 5.81299 6.12183 6.15477 6.45622 6.68223 6.82489 7.36675 7.41710 8.93168 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.038142 B = 0.007928 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.924004 B = 3530.851480 C = 4026.092240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.296 6.296 3 C 0.405 3.595 4 N -0.491 5.491 5 C 0.182 3.818 6 C 0.019 3.981 7 C 0.112 3.888 8 H 0.023 0.977 9 C -0.541 4.541 10 H 0.074 0.926 11 C 0.027 3.973 12 N -0.905 5.905 13 Si 0.959 3.041 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.288 1.288 17 C 0.080 3.920 18 N -0.852 5.852 19 N -0.180 5.180 20 N -0.337 5.337 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.215 0.785 25 H 0.265 0.735 26 H 0.009 0.991 27 H 0.092 0.908 28 H 0.340 0.660 29 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 -10.005 -2.452 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.195 6.195 3 C 0.100 3.900 4 N -0.221 5.221 5 C 0.005 3.995 6 C -0.131 4.131 7 C 0.090 3.910 8 H 0.042 0.958 9 C -0.580 4.580 10 H 0.092 0.908 11 C -0.174 4.174 12 N -0.543 5.543 13 Si 0.785 3.215 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.214 1.214 17 C -0.051 4.051 18 N -0.381 5.381 19 N -0.030 5.030 20 N -0.199 5.199 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.162 0.838 24 H 0.231 0.769 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.189 -9.803 -1.948 11.261 hybrid contribution 1.697 -0.249 -0.043 1.715 sum -3.492 -10.052 -1.991 10.826 Atomic orbital electron populations 1.23420 0.73430 1.06158 1.03132 1.86071 1.25515 1.20911 1.87041 1.22436 0.88218 0.87671 0.91634 1.68329 1.08582 1.29319 1.15915 1.24449 1.03736 0.85013 0.86269 1.24205 0.91762 1.01074 0.96071 1.17553 0.94357 0.84667 0.94393 0.95843 1.21373 1.06918 0.97305 1.32354 0.90828 1.25661 1.00731 0.94843 0.96192 1.70006 1.39578 1.00980 1.43723 0.85483 0.79281 0.78493 0.78292 1.18556 1.20388 1.21413 1.21826 0.89504 1.01369 0.92386 1.58775 1.21324 1.40104 1.17931 1.73521 1.11059 1.13504 1.04917 1.73653 1.32436 0.95100 1.18707 0.91873 0.91595 0.83838 0.76909 0.92509 0.97326 0.89003 0.84784 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.38 113.37 1.18 1.85 15 2 O -0.30 -8.96 10.55 -87.62 -0.92 -9.88 15 3 C 0.41 14.71 8.57 180.44 1.55 16.26 15 4 N -0.49 -18.28 10.56 -312.84 -3.30 -21.59 15 5 C 0.18 6.82 10.11 84.73 0.86 7.68 15 6 C 0.02 0.79 5.10 42.63 0.22 1.01 15 7 C 0.11 5.27 2.33 -12.28 -0.03 5.24 15 8 H 0.02 1.30 8.14 -2.39 -0.02 1.28 15 9 C -0.54 -26.25 7.93 25.60 0.20 -26.04 15 10 H 0.07 3.35 6.37 -2.91 -0.02 3.33 15 11 C 0.03 1.34 5.29 84.66 0.45 1.79 15 12 N -0.91 -47.99 11.29 21.45 0.24 -47.75 15 13 Si 0.96 39.49 29.54 68.60 2.03 41.52 15 14 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 15 H -0.28 -11.24 7.11 99.48 0.71 -10.53 15 16 H -0.29 -12.07 7.11 99.48 0.71 -11.36 15 17 C 0.08 3.56 6.07 86.30 0.52 4.08 15 18 N -0.85 -33.67 9.62 -186.71 -1.80 -35.46 15 19 N -0.18 -7.58 10.98 -47.43 -0.52 -8.10 15 20 N -0.34 -12.89 10.41 -174.45 -1.82 -14.71 15 21 H 0.06 1.32 8.10 -2.38 -0.02 1.30 15 22 H 0.07 1.33 8.10 -2.39 -0.02 1.31 15 23 H 0.14 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.21 7.12 6.85 -2.91 -0.02 7.10 15 25 H 0.27 13.42 8.31 -92.71 -0.77 12.65 15 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 27 H 0.09 4.60 5.95 -2.39 -0.01 4.58 15 28 H 0.34 11.42 9.08 -89.69 -0.81 10.61 15 29 H 0.32 12.51 7.61 -89.70 -0.68 11.83 15 Total: -1.00 -58.08 254.85 -1.45 -59.53 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.30 Total: 24.58 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 4.94 Total: 11.86 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -7.20 Total: -127.61 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.92 Total: -9.88 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -58.08 -1.45 -59.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434141.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.061 kcal (2) G-P(sol) polarization free energy of solvation -58.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds