Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47282 * 119.99827 * 2 1 3 5 5 H 1.08001 * 119.99656 * 119.99491 * 4 2 1 6 6 C 1.37875 * 120.00051 * 299.99838 * 4 2 1 7 7 N 1.31516 * 119.99995 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46714 * 60.00875 * 8 6 4 10 10 H 1.48503 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47578 * 300.00322 * 8 6 4 12 12 C 1.50703 * 109.46934 * 240.00325 * 2 1 3 13 13 C 1.38166 * 120.02593 * 299.97412 * 12 2 1 14 14 C 1.38244 * 120.05849 * 179.75368 * 13 12 2 15 15 C 1.50696 * 119.94672 * 180.29937 * 14 13 12 16 16 F 1.39899 * 109.47213 * 90.24966 * 15 14 13 17 17 C 1.38288 * 120.10735 * 0.54781 * 14 13 12 18 18 C 1.38126 * 120.05387 * 359.44975 * 17 14 13 19 19 C 1.38707 * 120.03234 * 120.00405 * 12 2 1 20 20 O 1.35900 * 120.05163 * 359.94581 * 19 12 2 21 21 H 1.09007 * 109.46808 * 300.00312 * 1 2 3 22 22 H 1.08999 * 109.47165 * 60.00017 * 1 2 3 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99964 * 179.97438 * 7 6 4 25 25 H 1.08007 * 119.97101 * 0.04570 * 13 12 2 26 26 H 1.09002 * 109.46796 * 210.24996 * 15 14 13 27 27 H 1.08993 * 109.47000 * 330.24996 * 15 14 13 28 28 H 1.08002 * 119.97455 * 179.73146 * 17 14 13 29 29 H 1.08000 * 120.02655 * 180.29782 * 18 17 14 30 30 H 0.96701 * 114.00536 * 270.02444 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1206 4.0081 10 1 1.8261 -0.4204 5.2204 11 1 1.8260 -2.5201 4.0078 12 6 2.0323 -0.7104 -1.2305 13 6 1.6992 -2.0333 -1.4495 14 6 2.1554 -2.6841 -2.5807 15 6 1.7851 -4.1250 -2.8204 16 9 0.5965 -4.1849 -3.5559 17 6 2.9553 -2.0165 -3.4900 18 6 3.2910 -0.6939 -3.2756 19 6 2.8298 -0.0369 -2.1440 20 8 3.1584 1.2645 -1.9310 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.7082 1.1610 3.4844 25 1 1.0780 -2.5581 -0.7387 26 1 2.5823 -4.6172 -3.3775 27 1 1.6461 -4.6284 -1.8637 28 1 3.3141 -2.5283 -4.3707 29 1 3.9118 -0.1715 -3.9885 30 1 2.5321 1.8956 -2.3112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500539.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -84.413346 kcal Electronic energy + Delta-G solvation = -15147.885088 eV Core-core repulsion = 12436.099434 eV Total energy + Delta-G solvation = -2711.785654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.40735 -39.37993 -36.27146 -34.49574 -31.52802 -30.74768 -28.32525 -25.52838 -25.14154 -22.93966 -21.21541 -19.51325 -17.76469 -16.44704 -15.99877 -15.63806 -15.54459 -14.80336 -14.64924 -14.51409 -13.49637 -13.00162 -12.69100 -12.49199 -11.85714 -11.70488 -11.39361 -11.00641 -10.84678 -10.80787 -10.75768 -10.50571 -10.19741 -10.05196 -9.29005 -9.04992 -8.36980 -8.26711 -7.83460 -6.01861 -4.08153 1.66075 1.94854 3.30927 3.35363 3.38295 4.11078 4.43213 4.77592 4.87566 4.96150 5.09762 5.29263 5.47159 5.50835 5.85689 5.94571 6.13109 6.37247 6.52452 6.72039 6.80233 6.89434 7.03577 7.12442 7.21034 7.42754 7.69403 7.95127 8.05142 8.24180 8.37457 8.93169 9.55734 11.04084 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.008951 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.161559 B = 3127.384591 C = 3638.717450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.046 0.954 4 C -0.506 4.506 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.056 4.056 13 C -0.075 4.075 14 C -0.155 4.155 15 C 0.111 3.889 16 F -0.217 7.217 17 C -0.111 4.111 18 C -0.153 4.153 19 C 0.101 3.899 20 O -0.491 6.491 21 H 0.087 0.913 22 H 0.007 0.993 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.128 0.872 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -4.827 -9.984 11.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.064 0.936 4 C -0.544 4.544 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.057 4.057 13 C -0.093 4.093 14 C -0.155 4.155 15 C 0.056 3.944 16 F -0.198 7.198 17 C -0.129 4.129 18 C -0.172 4.172 19 C 0.056 3.944 20 O -0.300 6.300 21 H 0.105 0.895 22 H 0.026 0.974 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.939 -4.951 -9.557 10.936 hybrid contribution -0.024 -0.187 0.595 0.624 sum 1.915 -5.138 -8.961 10.506 Atomic orbital electron populations 1.21818 0.97676 0.99304 1.00258 1.17844 0.92556 0.96301 0.88006 0.93606 1.21020 1.31261 1.12296 0.89830 0.92656 1.24942 0.95050 0.95006 0.98902 1.69867 1.36596 1.22844 1.23532 0.86631 0.79283 0.79721 0.82242 1.20249 1.21241 1.20252 1.21045 0.93445 0.94360 0.96841 1.20896 0.98574 0.94201 0.95598 1.20150 1.01999 0.96113 0.97277 1.20748 0.83310 0.94291 0.96019 1.92780 1.49947 1.97465 1.79619 1.20607 0.99221 0.94324 0.98752 1.21245 1.02749 0.95614 0.97559 1.18491 0.97113 0.85245 0.93517 1.84831 1.51738 1.13447 1.80023 0.89462 0.97433 0.95312 0.92877 0.85396 0.90505 0.90050 0.86531 0.86190 0.76300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.78 37.16 0.33 -2.85 16 2 C 0.07 1.78 2.44 -92.92 -0.23 1.55 16 3 H 0.05 1.24 6.99 -51.93 -0.36 0.88 16 4 C -0.51 -13.84 8.24 -34.44 -0.28 -14.12 16 5 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C -0.06 -1.22 4.75 -104.47 -0.50 -1.72 16 13 C -0.07 -1.47 8.36 -39.61 -0.33 -1.80 16 14 C -0.15 -2.59 5.60 -104.60 -0.59 -3.17 16 15 C 0.11 1.50 7.67 36.00 0.28 1.78 16 16 F -0.22 -3.37 17.34 2.25 0.04 -3.33 16 17 C -0.11 -1.72 9.69 -39.60 -0.38 -2.11 16 18 C -0.15 -2.54 9.99 -39.43 -0.39 -2.94 16 19 C 0.10 1.97 6.68 -39.22 -0.26 1.71 16 20 O -0.49 -9.21 12.27 -19.42 -0.24 -9.45 16 21 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 22 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 23 H 0.03 0.65 7.39 -51.93 -0.38 0.27 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.13 2.55 7.58 -52.48 -0.40 2.15 16 26 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 27 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.38 5.29 9.06 45.56 0.41 5.70 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -30.24 262.72 -5.78 -36.01 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -2.69 Total: 3.17 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.46 Total: -22.05 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.63 Total: -24.58 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.24 Total: -9.45 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.04 Total: -3.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.24 -5.78 -36.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500539.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.399 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds