Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47004 * 2 1 4 4 C 1.50697 * 109.47282 * 119.99827 * 2 1 3 5 5 H 1.08001 * 119.99656 * 119.99491 * 4 2 1 6 6 C 1.37875 * 120.00051 * 299.99838 * 4 2 1 7 7 N 1.31516 * 119.99995 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99939 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46714 * 60.00875 * 8 6 4 10 10 H 1.48503 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.47578 * 300.00322 * 8 6 4 12 12 C 1.50703 * 109.46934 * 240.00325 * 2 1 3 13 13 C 1.38166 * 120.02593 * 299.97412 * 12 2 1 14 14 C 1.38244 * 120.05849 * 179.75368 * 13 12 2 15 15 C 1.50696 * 119.94672 * 180.29937 * 14 13 12 16 16 F 1.39899 * 109.47213 * 90.24966 * 15 14 13 17 17 C 1.38288 * 120.10735 * 0.54781 * 14 13 12 18 18 C 1.38126 * 120.05387 * 359.44975 * 17 14 13 19 19 C 1.38707 * 120.03234 * 120.00405 * 12 2 1 20 20 O 1.35900 * 120.05163 * 359.94581 * 19 12 2 21 21 H 1.09007 * 109.46808 * 300.00312 * 1 2 3 22 22 H 1.08999 * 109.47165 * 60.00017 * 1 2 3 23 23 H 1.08999 * 109.47253 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99964 * 179.97438 * 7 6 4 25 25 H 1.08007 * 119.97101 * 0.04570 * 13 12 2 26 26 H 1.09002 * 109.46796 * 210.24996 * 15 14 13 27 27 H 1.08993 * 109.47000 * 330.24996 * 15 14 13 28 28 H 1.08002 * 119.97455 * 179.73146 * 17 14 13 29 29 H 1.08000 * 120.02655 * 180.29782 * 18 17 14 30 30 H 0.96701 * 114.00536 * 270.02444 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1206 4.0081 10 1 1.8261 -0.4204 5.2204 11 1 1.8260 -2.5201 4.0078 12 6 2.0323 -0.7104 -1.2305 13 6 1.6992 -2.0333 -1.4495 14 6 2.1554 -2.6841 -2.5807 15 6 1.7851 -4.1250 -2.8204 16 9 0.5965 -4.1849 -3.5559 17 6 2.9553 -2.0165 -3.4900 18 6 3.2910 -0.6939 -3.2756 19 6 2.8298 -0.0369 -2.1440 20 8 3.1584 1.2645 -1.9310 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.7082 1.1610 3.4844 25 1 1.0780 -2.5581 -0.7387 26 1 2.5823 -4.6172 -3.3775 27 1 1.6461 -4.6284 -1.8637 28 1 3.3141 -2.5283 -4.3707 29 1 3.9118 -0.1715 -3.9885 30 1 2.5321 1.8956 -2.3112 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500539.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -103.378651 kcal Electronic energy + Delta-G solvation = -15148.707485 eV Core-core repulsion = 12436.099434 eV Total energy + Delta-G solvation = -2712.608051 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.53154 -40.81159 -37.66813 -36.35829 -33.41755 -32.02997 -29.98879 -27.23415 -26.74538 -24.53300 -22.65442 -21.16560 -19.18655 -18.35344 -17.30843 -17.05709 -16.71909 -16.46718 -16.14519 -15.90647 -14.99412 -14.56448 -14.40636 -14.02793 -13.52750 -13.20192 -13.08535 -12.85285 -12.62643 -12.38078 -12.19331 -12.11159 -11.88069 -11.70490 -11.03728 -10.93386 -10.46074 -9.65606 -9.32734 -8.10939 -6.24484 0.28950 0.55279 1.40067 1.41427 1.49049 2.41083 2.75351 3.16819 3.44561 3.68603 3.89815 4.05187 4.19226 4.32276 4.50091 4.75018 4.79627 4.85255 4.94142 5.02196 5.21136 5.28675 5.36507 5.52200 5.58088 5.64100 5.98063 6.03270 6.07244 6.33648 6.83245 6.93928 7.42515 8.93545 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.008951 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.161559 B = 3127.384591 C = 3638.717450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.073 3.927 3 H 0.014 0.986 4 C -0.522 4.522 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 C -0.093 4.093 13 C -0.090 4.090 14 C -0.155 4.155 15 C 0.110 3.890 16 F -0.228 7.228 17 C -0.097 4.097 18 C -0.147 4.147 19 C 0.085 3.915 20 O -0.508 6.508 21 H 0.060 0.940 22 H 0.024 0.976 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.090 0.910 28 H 0.161 0.839 29 H 0.151 0.849 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -6.436 -11.589 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.055 3.945 3 H 0.032 0.968 4 C -0.560 4.560 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.094 4.094 13 C -0.109 4.109 14 C -0.155 4.155 15 C 0.056 3.944 16 F -0.210 7.210 17 C -0.115 4.115 18 C -0.166 4.166 19 C 0.041 3.959 20 O -0.320 6.320 21 H 0.079 0.921 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.108 0.892 28 H 0.178 0.822 29 H 0.169 0.831 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.009 -6.559 -11.174 13.301 hybrid contribution -0.339 0.330 1.005 1.111 sum 2.669 -6.228 -10.168 12.219 Atomic orbital electron populations 1.21639 0.97481 0.99079 0.99690 1.17622 0.92789 0.94716 0.89373 0.96826 1.21331 1.31137 1.12239 0.91283 0.93360 1.25720 0.95301 0.95754 1.01772 1.69999 1.37516 1.24008 1.24061 0.85674 0.78640 0.78977 0.78783 1.20051 1.20726 1.19300 1.20837 0.96242 0.95527 0.96760 1.20867 0.99309 0.93708 0.96991 1.20492 1.01238 0.97749 0.96025 1.20958 0.83848 0.92402 0.97225 1.92759 1.50931 1.97369 1.79896 1.21133 0.97285 0.93787 0.99281 1.21561 1.02148 0.96165 0.96695 1.18710 0.97309 0.85531 0.94337 1.84767 1.52581 1.13881 1.80737 0.92128 0.95694 0.95214 0.92906 0.86846 0.86489 0.89215 0.82170 0.83141 0.74311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.99 8.78 71.98 0.63 -5.36 16 2 C 0.07 3.80 2.44 -12.29 -0.03 3.77 16 3 H 0.01 0.78 6.99 -2.39 -0.02 0.76 16 4 C -0.52 -29.38 8.24 25.60 0.21 -29.17 16 5 H 0.05 2.70 7.60 -2.91 -0.02 2.68 16 6 C 0.01 0.74 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 C -0.09 -4.09 4.75 -19.77 -0.09 -4.18 16 13 C -0.09 -3.54 8.36 22.25 0.19 -3.36 16 14 C -0.15 -4.75 5.60 -19.85 -0.11 -4.86 16 15 C 0.11 2.59 7.67 71.23 0.55 3.13 16 16 F -0.23 -6.44 17.34 44.97 0.78 -5.67 16 17 C -0.10 -2.61 9.69 22.26 0.22 -2.40 16 18 C -0.15 -4.44 9.99 22.36 0.22 -4.22 16 19 C 0.09 3.29 6.68 22.50 0.15 3.44 16 20 O -0.51 -19.09 12.27 -92.42 -1.13 -20.22 16 21 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 22 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.03 1.40 7.39 -2.39 -0.02 1.38 16 24 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.11 4.62 7.58 -2.91 -0.02 4.60 16 26 H 0.12 1.87 8.08 -2.39 -0.02 1.85 16 27 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.40 11.14 9.06 -74.06 -0.67 10.47 16 Total: -1.00 -66.51 262.72 4.77 -61.73 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.48 Total: 13.17 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 2.38 Total: -42.01 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.24 Total: -53.21 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -1.13 Total: -20.22 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.78 Total: -5.67 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.51 4.77 -61.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500539.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.648 kcal (2) G-P(sol) polarization free energy of solvation -66.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds