Wall clock time and date at job start Mon Mar 30 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99693 * 2 1 4 4 C 1.53001 * 109.46852 * 173.57824 * 3 2 1 5 5 C 1.50696 * 109.47204 * 53.58201 * 3 2 1 6 6 H 1.08008 * 119.99834 * 239.99994 * 5 3 2 7 7 C 1.37870 * 120.00593 * 59.99743 * 5 3 2 8 8 N 1.31523 * 119.99839 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00478 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47241 * 120.00036 * 9 7 5 12 12 H 1.48499 * 109.47603 * 239.99914 * 9 7 5 13 13 C 1.50702 * 109.47131 * 293.57831 * 3 2 1 14 14 C 1.38218 * 120.00839 * 353.72002 * 13 3 2 15 15 C 1.38229 * 120.02080 * 180.02562 * 14 13 3 16 16 C 1.38270 * 120.05170 * 359.97438 * 15 14 13 17 17 C 1.38171 * 120.02230 * 359.97438 * 16 15 14 18 18 C 1.38429 * 120.01263 * 173.74124 * 13 3 2 19 19 F 1.35107 * 120.02689 * 359.97438 * 18 13 3 20 20 H 1.09000 * 109.47418 * 174.05012 * 1 2 3 21 21 H 1.09007 * 109.47033 * 294.04895 * 1 2 3 22 22 H 1.08994 * 109.47279 * 54.04939 * 1 2 3 23 23 H 1.08997 * 109.46843 * 179.97438 * 4 3 2 24 24 H 1.08993 * 109.47343 * 300.00087 * 4 3 2 25 25 H 1.09003 * 109.47062 * 60.00285 * 4 3 2 26 26 H 0.96995 * 120.00234 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.99324 * 359.97438 * 14 13 3 28 28 H 1.08001 * 119.96997 * 180.02562 * 15 14 13 29 29 H 1.08003 * 119.98530 * 179.72239 * 16 15 14 30 30 H 1.08001 * 120.00924 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5271 1.1884 0.1613 5 6 1.4439 2.1075 1.1433 6 1 0.9093 3.0252 0.9466 7 6 1.6081 1.6699 2.4404 8 7 2.2585 0.5521 2.6799 9 14 0.9068 2.6643 3.8576 10 1 0.2243 3.8711 3.3255 11 1 -0.0696 1.8350 4.6089 12 1 2.0073 3.0772 4.7651 13 6 1.6953 1.9956 -1.3022 14 6 1.0593 1.3031 -2.3154 15 6 0.7708 1.9357 -3.5101 16 6 1.1175 3.2617 -3.6929 17 6 1.7523 3.9561 -2.6810 18 6 2.0432 3.3230 -1.4842 19 9 2.6647 4.0009 -0.4945 20 1 -0.3634 -1.0221 -0.1065 21 1 -0.3633 0.4188 0.9385 22 1 -0.3633 0.6033 -0.8319 23 1 3.9705 2.1842 0.1609 24 1 3.7549 0.6893 1.1031 25 1 3.9368 0.6084 -0.6656 26 1 2.3744 0.2444 3.5924 27 1 0.7885 0.2672 -2.1739 28 1 0.2736 1.3939 -4.3011 29 1 0.8956 3.7536 -4.6284 30 1 2.0226 4.9919 -2.8239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:50 Heat of formation + Delta-G solvation = -58.512668 kcal Electronic energy + Delta-G solvation = -16024.265851 eV Core-core repulsion = 13313.603334 eV Total energy + Delta-G solvation = -2710.662516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -47.95685 -38.83862 -36.49406 -32.69764 -31.20504 -30.02286 -28.41292 -25.55890 -24.76180 -22.55266 -22.01889 -19.71847 -17.07565 -16.64256 -15.66028 -15.24254 -14.71504 -14.51695 -14.00539 -13.82496 -13.59955 -13.37790 -12.52010 -12.05725 -11.71192 -11.62464 -11.28512 -10.97221 -10.89921 -10.77756 -10.69753 -10.39093 -10.16790 -9.79308 -9.09614 -8.53728 -8.25873 -8.06999 -7.79300 -6.00911 -4.18676 1.78839 1.86300 3.26026 3.34718 3.39778 4.21267 4.39683 4.99894 5.11045 5.31624 5.40770 5.53275 5.62704 5.88067 5.99757 6.42172 6.52337 6.58518 6.64864 6.74076 6.87856 6.92459 6.95367 7.05653 7.13736 7.38466 7.56822 7.74332 7.94426 8.18807 8.73875 8.98041 9.52533 10.99093 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.011825 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.675899 B = 2367.358815 C = 2713.215792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.373 6.373 3 C 0.270 3.730 4 C -0.122 4.122 5 C -0.541 4.541 6 H 0.057 0.943 7 C 0.082 3.918 8 N -0.857 5.857 9 Si 0.888 3.112 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C -0.103 4.103 14 C -0.098 4.098 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.169 4.169 18 C 0.112 3.888 19 F -0.128 7.128 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.024 0.976 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.016 0.984 26 H 0.260 0.740 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 2.523 -8.614 9.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.291 6.291 3 C 0.232 3.768 4 C -0.179 4.179 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.124 4.124 8 N -0.493 5.493 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.104 4.104 14 C -0.116 4.116 15 C -0.161 4.161 16 C -0.134 4.134 17 C -0.188 4.188 18 C 0.092 3.908 19 F -0.106 7.106 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.114 0.886 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.802 2.255 -8.427 8.908 hybrid contribution -0.551 0.959 0.946 1.455 sum -2.353 3.213 -7.481 8.475 Atomic orbital electron populations 1.22381 0.84344 0.98488 1.00033 1.87849 1.17369 1.29753 1.94176 1.17990 0.91931 0.80804 0.86106 1.21638 0.93818 1.00042 1.02409 1.21347 1.37339 1.08701 0.90539 0.92431 1.24932 0.94342 0.94544 0.98537 1.69995 1.39134 1.20209 1.19990 0.86608 0.79027 0.80432 0.82426 1.19660 1.20908 1.20748 1.21386 0.96789 0.93030 0.99218 1.21133 0.97749 1.00683 0.92017 1.21082 1.02220 0.95081 0.97686 1.20752 0.99767 0.94685 0.98236 1.21039 1.03745 1.00529 0.93479 1.17494 0.97214 0.90415 0.85628 1.91504 1.79590 1.79311 1.60193 0.93024 0.93810 0.95745 0.93488 0.88592 0.96452 0.92965 0.84771 0.86440 0.86255 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 9.43 101.05 0.95 1.94 16 2 O -0.37 -9.45 8.99 -35.23 -0.32 -9.77 16 3 C 0.27 6.79 0.47 -92.92 -0.04 6.75 16 4 C -0.12 -3.04 8.47 37.16 0.31 -2.73 16 5 C -0.54 -14.66 5.48 -34.44 -0.19 -14.85 16 6 H 0.06 1.61 7.14 -52.48 -0.37 1.23 16 7 C 0.08 2.23 5.04 -17.82 -0.09 2.14 16 8 N -0.86 -23.98 10.87 55.43 0.60 -23.38 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.10 -2.28 4.44 -104.56 -0.46 -2.75 16 14 C -0.10 -1.87 7.68 -39.59 -0.30 -2.18 16 15 C -0.14 -2.26 10.04 -39.57 -0.40 -2.66 16 16 C -0.12 -1.77 10.04 -39.59 -0.40 -2.16 16 17 C -0.17 -2.91 10.03 -39.52 -0.40 -3.31 16 18 C 0.11 2.36 6.61 -39.42 -0.26 2.10 16 19 F -0.13 -2.90 14.33 2.25 0.03 -2.87 16 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.04 1.05 7.06 -51.93 -0.37 0.69 16 22 H 0.02 0.50 5.30 -51.93 -0.28 0.22 16 23 H 0.05 1.14 6.82 -51.93 -0.35 0.78 16 24 H 0.10 2.60 6.07 -51.93 -0.32 2.28 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.13 2.52 5.81 -52.49 -0.30 2.21 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 249.75 15.07 3.76 3.76 Total: -1.00 -29.02 249.75 -5.45 -34.47 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.24 Total: -0.67 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.27 Total: -17.70 kcal Atomic # 7 Polarization: -23.98 SS G_CDS: 0.60 Total: -23.38 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.32 Total: -9.77 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.03 Total: -2.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.02 -5.45 -34.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.039 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds