Wall clock time and date at job start Mon Mar 30 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99693 * 2 1 4 4 C 1.53001 * 109.46852 * 173.57824 * 3 2 1 5 5 C 1.50696 * 109.47204 * 53.58201 * 3 2 1 6 6 H 1.08008 * 119.99834 * 239.99994 * 5 3 2 7 7 C 1.37870 * 120.00593 * 59.99743 * 5 3 2 8 8 N 1.31523 * 119.99839 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00478 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47241 * 120.00036 * 9 7 5 12 12 H 1.48499 * 109.47603 * 239.99914 * 9 7 5 13 13 C 1.50702 * 109.47131 * 293.57831 * 3 2 1 14 14 C 1.38218 * 120.00839 * 353.72002 * 13 3 2 15 15 C 1.38229 * 120.02080 * 180.02562 * 14 13 3 16 16 C 1.38270 * 120.05170 * 359.97438 * 15 14 13 17 17 C 1.38171 * 120.02230 * 359.97438 * 16 15 14 18 18 C 1.38429 * 120.01263 * 173.74124 * 13 3 2 19 19 F 1.35107 * 120.02689 * 359.97438 * 18 13 3 20 20 H 1.09000 * 109.47418 * 174.05012 * 1 2 3 21 21 H 1.09007 * 109.47033 * 294.04895 * 1 2 3 22 22 H 1.08994 * 109.47279 * 54.04939 * 1 2 3 23 23 H 1.08997 * 109.46843 * 179.97438 * 4 3 2 24 24 H 1.08993 * 109.47343 * 300.00087 * 4 3 2 25 25 H 1.09003 * 109.47062 * 60.00285 * 4 3 2 26 26 H 0.96995 * 120.00234 * 179.97438 * 8 7 5 27 27 H 1.08001 * 119.99324 * 359.97438 * 14 13 3 28 28 H 1.08001 * 119.96997 * 180.02562 * 15 14 13 29 29 H 1.08003 * 119.98530 * 179.72239 * 16 15 14 30 30 H 1.08001 * 120.00924 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5271 1.1884 0.1613 5 6 1.4439 2.1075 1.1433 6 1 0.9093 3.0252 0.9466 7 6 1.6081 1.6699 2.4404 8 7 2.2585 0.5521 2.6799 9 14 0.9068 2.6643 3.8576 10 1 0.2243 3.8711 3.3255 11 1 -0.0696 1.8350 4.6089 12 1 2.0073 3.0772 4.7651 13 6 1.6953 1.9956 -1.3022 14 6 1.0593 1.3031 -2.3154 15 6 0.7708 1.9357 -3.5101 16 6 1.1175 3.2617 -3.6929 17 6 1.7523 3.9561 -2.6810 18 6 2.0432 3.3230 -1.4842 19 9 2.6647 4.0009 -0.4945 20 1 -0.3634 -1.0221 -0.1065 21 1 -0.3633 0.4188 0.9385 22 1 -0.3633 0.6033 -0.8319 23 1 3.9705 2.1842 0.1609 24 1 3.7549 0.6893 1.1031 25 1 3.9368 0.6084 -0.6656 26 1 2.3744 0.2444 3.5924 27 1 0.7885 0.2672 -2.1739 28 1 0.2736 1.3939 -4.3011 29 1 0.8956 3.7536 -4.6284 30 1 2.0226 4.9919 -2.8239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260602657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:49 Heat of formation + Delta-G solvation = -75.709676 kcal Electronic energy + Delta-G solvation = -16025.011569 eV Core-core repulsion = 13313.603334 eV Total energy + Delta-G solvation = -2711.408235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.57723 -40.39612 -38.17357 -34.70558 -32.93974 -31.42907 -30.06243 -27.56608 -26.64498 -24.14299 -23.43901 -21.44784 -18.83396 -18.34724 -17.22353 -16.94302 -16.47515 -16.24245 -15.65659 -15.45805 -15.35335 -15.01316 -14.20854 -13.64482 -13.41491 -13.25787 -12.97563 -12.82772 -12.78580 -12.63954 -12.28360 -12.24987 -11.95476 -11.63198 -10.92260 -10.61480 -9.96628 -9.64823 -9.33066 -8.06785 -6.29995 0.39728 0.47113 1.34479 1.37901 1.48126 2.38168 2.84642 3.09586 3.55115 3.69403 4.03245 4.09442 4.26460 4.55906 4.60496 4.78132 4.85416 4.88031 5.04306 5.10741 5.21325 5.29532 5.33084 5.45930 5.58317 5.61118 5.65452 5.92007 6.16142 6.18633 6.70609 7.05150 7.44392 8.92128 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.031786 B = 0.011825 C = 0.010317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.675899 B = 2367.358815 C = 2713.215792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.393 6.393 3 C 0.264 3.736 4 C -0.115 4.115 5 C -0.545 4.545 6 H 0.040 0.960 7 C 0.039 3.961 8 N -0.883 5.883 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.278 1.278 13 C -0.136 4.136 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.099 4.099 17 C -0.164 4.164 18 C 0.076 3.924 19 F -0.150 7.150 20 H 0.079 0.921 21 H 0.015 0.985 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.027 0.973 26 H 0.261 0.739 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 3.215 -10.956 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.312 6.312 3 C 0.226 3.774 4 C -0.172 4.172 5 C -0.583 4.583 6 H 0.059 0.941 7 C -0.164 4.164 8 N -0.520 5.520 9 Si 0.767 3.233 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.204 1.204 13 C -0.137 4.137 14 C -0.128 4.128 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.183 4.183 18 C 0.056 3.944 19 F -0.128 7.128 20 H 0.097 0.903 21 H 0.034 0.966 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.177 0.823 29 H 0.186 0.814 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.991 2.949 -10.772 11.562 hybrid contribution -0.212 0.752 1.539 1.727 sum -3.203 3.701 -9.233 10.450 Atomic orbital electron populations 1.22452 0.82895 1.00332 0.99199 1.87780 1.19023 1.30046 1.94374 1.17880 0.91288 0.80703 0.87564 1.21518 0.94914 0.99506 1.01301 1.21470 1.36925 1.08177 0.91768 0.94124 1.25566 0.94765 0.95434 1.00588 1.70101 1.40201 1.21387 1.20317 0.85774 0.78496 0.79106 0.79900 1.19855 1.20224 1.20351 1.21171 0.99743 0.93909 0.98891 1.21229 0.97994 1.00749 0.92827 1.21538 1.00525 0.95534 0.96988 1.21329 0.97025 0.94265 0.99088 1.21407 1.02844 1.01812 0.92192 1.17925 0.98979 0.90596 0.86863 1.91435 1.80311 1.79641 1.61447 0.90274 0.96634 0.94050 0.93912 0.91192 0.95410 0.92988 0.84957 0.82305 0.81422 0.83294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.10 9.43 113.37 1.07 3.17 16 2 O -0.39 -20.21 8.99 -148.98 -1.34 -21.55 16 3 C 0.26 13.56 0.47 -12.29 -0.01 13.55 16 4 C -0.11 -5.94 8.47 71.98 0.61 -5.33 16 5 C -0.55 -30.36 5.48 25.60 0.14 -30.22 16 6 H 0.04 2.34 7.14 -2.91 -0.02 2.32 16 7 C 0.04 2.18 5.04 84.65 0.43 2.61 16 8 N -0.88 -50.80 10.87 21.45 0.23 -50.57 16 9 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 13 C -0.14 -6.00 4.44 -19.82 -0.09 -6.08 16 14 C -0.11 -3.99 7.68 22.26 0.17 -3.82 16 15 C -0.13 -3.47 10.04 22.28 0.22 -3.25 16 16 C -0.10 -2.50 10.04 22.26 0.22 -2.28 16 17 C -0.16 -5.14 10.03 22.31 0.22 -4.92 16 18 C 0.08 3.15 6.61 22.37 0.15 3.30 16 19 F -0.15 -6.98 14.33 44.97 0.64 -6.33 16 20 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 21 H 0.01 0.74 7.06 -2.38 -0.02 0.73 16 22 H 0.04 1.66 5.30 -2.39 -0.01 1.65 16 23 H 0.04 2.16 6.82 -2.39 -0.02 2.15 16 24 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.13 4.75 5.81 -2.91 -0.02 4.73 16 28 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -64.71 249.75 5.85 -58.86 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.14 Total: 6.48 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 3.14 Total: -33.27 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.23 Total: -50.57 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -1.34 Total: -21.55 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.64 Total: -6.33 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.71 5.85 -58.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -64.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds