Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47019 * 2 1 4 4 F 1.39904 * 109.46640 * 240.00125 * 2 1 3 5 5 C 1.52998 * 109.47078 * 120.00800 * 2 1 3 6 6 H 1.08996 * 109.47473 * 57.25912 * 5 2 1 7 7 C 1.50702 * 109.47215 * 177.26776 * 5 2 1 8 8 H 1.08000 * 119.99580 * 114.37558 * 7 5 2 9 9 C 1.37876 * 119.99531 * 294.37897 * 7 5 2 10 10 N 1.31511 * 120.00087 * 348.85555 * 9 7 5 11 11 Si 1.86798 * 119.99410 * 168.85769 * 9 7 5 12 12 H 1.48503 * 109.47255 * 90.00168 * 11 9 7 13 13 H 1.48507 * 109.46958 * 209.99976 * 11 9 7 14 14 H 1.48503 * 109.47518 * 329.99467 * 11 9 7 15 15 C 1.50707 * 109.46800 * 297.26476 * 5 2 1 16 16 C 1.38290 * 119.96924 * 300.00434 * 15 5 2 17 17 C 1.38244 * 120.10769 * 179.97438 * 16 15 5 18 18 C 1.38169 * 120.05781 * 0.02562 * 17 16 15 19 19 C 1.38713 * 119.94382 * 0.02562 * 18 17 16 20 20 O 1.35893 * 120.05456 * 179.97438 * 19 18 17 21 21 C 1.38121 * 119.97028 * 120.02005 * 15 5 2 22 22 H 1.08996 * 109.46854 * 305.05384 * 1 2 3 23 23 H 1.09004 * 109.47018 * 65.05028 * 1 2 3 24 24 H 1.08996 * 109.47348 * 185.04745 * 1 2 3 25 25 H 0.97002 * 119.99256 * 179.97438 * 10 9 7 26 26 H 1.07999 * 119.94739 * 359.71853 * 16 15 5 27 27 H 1.08000 * 119.97010 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.02991 * 179.97438 * 18 17 16 29 29 H 0.96701 * 114.00483 * 270.01895 * 20 19 18 30 30 H 1.07998 * 120.03329 * 0.02562 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7214 1.2491 6 1 1.6372 -1.7339 1.2739 7 6 3.5455 -0.7804 1.2158 8 1 4.1233 -0.2455 1.9550 9 6 4.1851 -1.5170 0.2414 10 7 3.4963 -2.3394 -0.5194 11 14 6.0298 -1.3470 0.0023 12 1 6.7333 -2.3341 0.8602 13 1 6.3696 -1.5976 -1.4215 14 1 6.4533 0.0260 0.3779 15 6 1.5937 0.0270 2.4788 16 6 1.9841 1.3401 2.6679 17 6 1.5760 2.0295 3.7946 18 6 0.7771 1.4076 4.7349 19 6 0.3851 0.0902 4.5479 20 8 -0.4001 -0.5238 5.4716 21 6 0.7955 -0.5993 3.4159 22 1 -0.3633 0.5902 0.8412 23 1 -0.3633 0.4335 -0.9318 24 1 -0.3634 -1.0236 0.0904 25 1 3.9463 -2.8573 -1.2051 26 1 2.6123 1.8265 1.9364 27 1 1.8825 3.0547 3.9402 28 1 0.4589 1.9464 5.6151 29 1 0.0935 -0.9768 6.1689 30 1 0.4914 -1.6250 3.2681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260642750.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = -71.231407 kcal Electronic energy + Delta-G solvation = -15432.625097 eV Core-core repulsion = 12721.411055 eV Total energy + Delta-G solvation = -2711.214042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.79541 -39.26390 -36.65162 -33.98197 -31.83486 -29.92896 -29.06095 -26.95465 -23.45125 -22.12616 -21.58385 -19.70165 -17.48345 -16.49028 -15.89941 -15.20079 -14.87270 -14.53005 -14.45346 -13.57312 -13.51167 -13.24427 -12.35158 -12.04183 -11.73360 -11.58064 -11.41420 -11.19728 -11.12256 -10.85652 -10.68185 -10.25817 -10.05364 -9.53705 -9.29150 -9.14844 -8.33434 -8.20262 -7.87491 -6.01562 -4.04439 1.80077 1.94482 3.30943 3.38645 3.41507 4.17711 4.46217 4.64365 5.27792 5.39986 5.45873 5.79048 5.87711 5.89710 5.96208 6.05821 6.13712 6.32712 6.37304 6.56670 6.78206 6.84599 6.91783 6.98737 7.11902 7.25910 7.53681 7.75510 7.90316 8.00884 8.25773 8.92937 9.57351 11.05439 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.009394 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.899289 B = 2980.053029 C = 3337.251914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H 0.053 0.947 4 F -0.188 7.188 5 C 0.054 3.946 6 H 0.051 0.949 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.076 3.924 10 N -0.852 5.852 11 Si 0.887 3.113 12 H -0.282 1.282 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.012 4.012 16 C -0.122 4.122 17 C -0.110 4.110 18 C -0.171 4.171 19 C 0.094 3.906 20 O -0.505 6.505 21 C -0.150 4.150 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.383 0.617 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 5.333 6.605 9.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.069 3.931 3 H 0.071 0.929 4 F -0.169 7.169 5 C 0.035 3.965 6 H 0.069 0.931 7 C -0.574 4.574 8 H 0.078 0.922 9 C -0.130 4.130 10 N -0.486 5.486 11 Si 0.715 3.285 12 H -0.208 1.208 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.013 4.013 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.190 4.190 19 C 0.050 3.950 20 O -0.315 6.315 21 C -0.168 4.168 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.238 0.762 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.734 5.390 6.058 9.389 hybrid contribution 1.382 -0.191 0.125 1.401 sum -3.351 5.198 6.183 8.746 Atomic orbital electron populations 1.22490 0.97931 1.02252 1.01059 1.21656 0.90816 0.95153 0.85429 0.92941 1.92877 1.89847 1.82946 1.51216 1.18474 0.97216 0.94767 0.86028 0.93136 1.20812 0.89183 1.32562 1.14851 0.92223 1.24935 0.97944 0.94354 0.95759 1.70071 1.35608 1.22891 1.20034 0.86680 0.85912 0.78549 0.77383 1.20785 1.21104 1.19812 1.20273 0.91334 0.93392 0.96277 1.21149 1.00327 0.94858 0.97713 1.20956 0.97972 0.99447 0.94458 1.21151 1.01602 0.95302 1.00934 1.18458 0.94191 0.91615 0.90711 1.84787 1.34887 1.72072 1.39726 1.21388 0.99682 1.00537 0.95218 0.92231 0.93338 0.92277 0.92932 0.85735 0.86531 0.86628 0.76231 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 9.34 37.16 0.35 -3.12 16 2 C 0.11 2.44 3.39 -26.73 -0.09 2.35 16 3 H 0.05 1.15 7.30 -51.93 -0.38 0.77 16 4 F -0.19 -5.02 13.65 2.25 0.03 -4.99 16 5 C 0.05 1.30 1.80 -92.92 -0.17 1.13 16 6 H 0.05 1.34 7.80 -51.93 -0.41 0.94 16 7 C -0.54 -14.34 8.18 -34.44 -0.28 -14.62 16 8 H 0.06 1.58 7.55 -52.49 -0.40 1.19 16 9 C 0.08 2.10 4.80 -17.82 -0.09 2.01 16 10 N -0.85 -24.44 10.83 55.43 0.60 -23.84 16 11 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C -0.01 -0.26 3.70 -104.64 -0.39 -0.64 16 16 C -0.12 -2.29 8.62 -39.56 -0.34 -2.63 16 17 C -0.11 -1.76 10.04 -39.60 -0.40 -2.16 16 18 C -0.17 -2.69 9.99 -39.43 -0.39 -3.08 16 19 C 0.09 1.59 6.71 -39.21 -0.26 1.33 16 20 O -0.51 -7.47 13.50 -19.40 -0.26 -7.73 16 21 C -0.15 -2.85 9.61 -39.43 -0.38 -3.23 16 22 H 0.06 1.06 7.48 -51.93 -0.39 0.67 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.12 2.31 7.56 -52.49 -0.40 1.92 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 29 H 0.38 3.78 9.06 45.56 0.41 4.20 16 30 H 0.12 2.29 7.94 -52.49 -0.42 1.88 16 LS Contribution 260.45 15.07 3.92 3.92 Total: -1.00 -30.09 260.45 -5.96 -36.05 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.80 Total: 3.09 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -2.44 Total: -22.66 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.60 Total: -23.84 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.26 Total: -7.73 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.03 Total: -4.99 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.09 -5.96 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642750.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.181 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds