Wall clock time and date at job start Mon Mar 30 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47019 * 2 1 4 4 F 1.39904 * 109.46640 * 240.00125 * 2 1 3 5 5 C 1.52998 * 109.47078 * 120.00800 * 2 1 3 6 6 H 1.08996 * 109.47473 * 57.25912 * 5 2 1 7 7 C 1.50702 * 109.47215 * 177.26776 * 5 2 1 8 8 H 1.08000 * 119.99580 * 114.37558 * 7 5 2 9 9 C 1.37876 * 119.99531 * 294.37897 * 7 5 2 10 10 N 1.31511 * 120.00087 * 348.85555 * 9 7 5 11 11 Si 1.86798 * 119.99410 * 168.85769 * 9 7 5 12 12 H 1.48503 * 109.47255 * 90.00168 * 11 9 7 13 13 H 1.48507 * 109.46958 * 209.99976 * 11 9 7 14 14 H 1.48503 * 109.47518 * 329.99467 * 11 9 7 15 15 C 1.50707 * 109.46800 * 297.26476 * 5 2 1 16 16 C 1.38290 * 119.96924 * 300.00434 * 15 5 2 17 17 C 1.38244 * 120.10769 * 179.97438 * 16 15 5 18 18 C 1.38169 * 120.05781 * 0.02562 * 17 16 15 19 19 C 1.38713 * 119.94382 * 0.02562 * 18 17 16 20 20 O 1.35893 * 120.05456 * 179.97438 * 19 18 17 21 21 C 1.38121 * 119.97028 * 120.02005 * 15 5 2 22 22 H 1.08996 * 109.46854 * 305.05384 * 1 2 3 23 23 H 1.09004 * 109.47018 * 65.05028 * 1 2 3 24 24 H 1.08996 * 109.47348 * 185.04745 * 1 2 3 25 25 H 0.97002 * 119.99256 * 179.97438 * 10 9 7 26 26 H 1.07999 * 119.94739 * 359.71853 * 16 15 5 27 27 H 1.08000 * 119.97010 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.02991 * 179.97438 * 18 17 16 29 29 H 0.96701 * 114.00483 * 270.01895 * 20 19 18 30 30 H 1.07998 * 120.03329 * 0.02562 * 21 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 -1.1424 5 6 2.0400 -0.7214 1.2491 6 1 1.6372 -1.7339 1.2739 7 6 3.5455 -0.7804 1.2158 8 1 4.1233 -0.2455 1.9550 9 6 4.1851 -1.5170 0.2414 10 7 3.4963 -2.3394 -0.5194 11 14 6.0298 -1.3470 0.0023 12 1 6.7333 -2.3341 0.8602 13 1 6.3696 -1.5976 -1.4215 14 1 6.4533 0.0260 0.3779 15 6 1.5937 0.0270 2.4788 16 6 1.9841 1.3401 2.6679 17 6 1.5760 2.0295 3.7946 18 6 0.7771 1.4076 4.7349 19 6 0.3851 0.0902 4.5479 20 8 -0.4001 -0.5238 5.4716 21 6 0.7955 -0.5993 3.4159 22 1 -0.3633 0.5902 0.8412 23 1 -0.3633 0.4335 -0.9318 24 1 -0.3634 -1.0236 0.0904 25 1 3.9463 -2.8573 -1.2051 26 1 2.6123 1.8265 1.9364 27 1 1.8825 3.0547 3.9402 28 1 0.4589 1.9464 5.6151 29 1 0.0935 -0.9768 6.1689 30 1 0.4914 -1.6250 3.2681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642750.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:39 Heat of formation + Delta-G solvation = -90.142848 kcal Electronic energy + Delta-G solvation = -15433.445159 eV Core-core repulsion = 12721.411055 eV Total energy + Delta-G solvation = -2712.034104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.77087 -40.61664 -37.99835 -35.68693 -33.74995 -31.39119 -30.49107 -28.72856 -25.33088 -23.52180 -23.08563 -21.33357 -18.90466 -18.40165 -17.32623 -16.80669 -16.55368 -16.17373 -15.95345 -15.42092 -15.27148 -14.55548 -14.16231 -13.69260 -13.29250 -13.19538 -13.01649 -12.85336 -12.72099 -12.63366 -12.33621 -11.98167 -11.87641 -11.24289 -11.05482 -10.96793 -10.39930 -9.60672 -9.31435 -8.09320 -6.17545 0.46062 0.57410 1.40459 1.43276 1.52573 2.43816 2.87369 3.19852 3.41651 4.05597 4.12901 4.19616 4.22864 4.37282 4.46375 4.60361 4.66008 4.78230 4.97185 5.13227 5.16671 5.18689 5.39072 5.57330 5.61654 5.69146 5.77130 6.01118 6.10540 6.27497 6.85711 6.93034 7.46793 8.96954 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.030007 B = 0.009394 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.899289 B = 2980.053029 C = 3337.251914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.097 3.903 3 H 0.062 0.938 4 F -0.213 7.213 5 C 0.057 3.943 6 H 0.010 0.990 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.026 3.974 10 N -0.885 5.885 11 Si 0.946 3.054 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.264 1.264 15 C -0.033 4.033 16 C -0.136 4.136 17 C -0.097 4.097 18 C -0.162 4.162 19 C 0.102 3.898 20 O -0.509 6.509 21 C -0.169 4.169 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.258 0.742 26 H 0.119 0.881 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.407 0.593 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 7.288 8.337 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.080 0.920 4 F -0.194 7.194 5 C 0.038 3.962 6 H 0.029 0.971 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.177 4.177 10 N -0.521 5.521 11 Si 0.772 3.228 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.189 1.189 15 C -0.034 4.034 16 C -0.155 4.155 17 C -0.115 4.115 18 C -0.180 4.180 19 C 0.057 3.943 20 O -0.322 6.322 21 C -0.188 4.188 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.137 0.863 27 H 0.171 0.829 28 H 0.168 0.832 29 H 0.265 0.735 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.895 7.345 7.820 11.792 hybrid contribution 1.370 -0.791 -0.283 1.607 sum -3.525 6.554 7.537 10.592 Atomic orbital electron populations 1.22330 0.95047 1.02160 1.02778 1.21818 0.93220 0.95004 0.83910 0.91970 1.92821 1.90434 1.83548 1.52606 1.18279 0.95777 0.93506 0.88644 0.97137 1.21160 0.90964 1.31830 1.14416 0.92514 1.25696 1.02032 0.94211 0.95739 1.70207 1.37155 1.23970 1.20774 0.85744 0.81103 0.78865 0.77099 1.20254 1.21210 1.18861 1.19966 0.93414 0.94392 0.95599 1.21166 1.00992 0.94196 0.99101 1.21297 0.96620 1.00759 0.92783 1.21522 1.00270 0.94567 1.01667 1.18476 0.93387 0.92181 0.90217 1.84726 1.35152 1.72294 1.40010 1.21367 1.00696 1.00371 0.96362 0.90586 0.91390 0.93293 0.93283 0.86268 0.82861 0.83220 0.73507 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.35 9.34 71.98 0.67 -5.68 16 2 C 0.10 4.54 3.39 30.59 0.10 4.64 16 3 H 0.06 2.74 7.30 -2.39 -0.02 2.72 16 4 F -0.21 -11.71 13.65 44.97 0.61 -11.10 16 5 C 0.06 2.82 1.80 -12.28 -0.02 2.80 16 6 H 0.01 0.59 7.80 -2.39 -0.02 0.57 16 7 C -0.55 -29.85 8.18 25.60 0.21 -29.64 16 8 H 0.06 3.05 7.55 -2.91 -0.02 3.03 16 9 C 0.03 1.46 4.80 84.65 0.41 1.87 16 10 N -0.89 -52.52 10.83 21.45 0.23 -52.29 16 11 Si 0.95 44.01 29.55 68.60 2.03 46.04 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 15 C -0.03 -1.38 3.70 -19.88 -0.07 -1.45 16 16 C -0.14 -4.88 8.62 22.28 0.19 -4.69 16 17 C -0.10 -2.72 10.04 22.25 0.22 -2.50 16 18 C -0.16 -4.40 9.99 22.37 0.22 -4.18 16 19 C 0.10 3.18 6.71 22.51 0.15 3.34 16 20 O -0.51 -13.57 13.50 -92.34 -1.25 -14.81 16 21 C -0.17 -6.42 9.61 22.37 0.21 -6.20 16 22 H 0.08 2.64 7.48 -2.39 -0.02 2.62 16 23 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 26 H 0.12 4.31 7.56 -2.91 -0.02 4.29 16 27 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.41 6.77 9.06 -74.06 -0.67 6.10 16 30 H 0.11 4.28 7.94 -2.91 -0.02 4.25 16 Total: -1.00 -65.74 260.45 4.40 -61.34 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.47 Total: 12.52 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 2.30 Total: -41.69 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.23 Total: -52.29 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.25 Total: -14.81 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 0.61 Total: -11.10 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.74 4.40 -61.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642750.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.804 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds