Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00063 * 2 1 4 4 C 1.53003 * 109.46907 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46961 * 60.00359 * 3 2 1 6 6 H 1.08002 * 119.99512 * 239.99987 * 5 3 2 7 7 C 1.37867 * 120.00041 * 59.99956 * 5 3 2 8 8 N 1.31516 * 120.00015 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00475 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47097 * 89.99852 * 9 7 5 11 11 H 1.48497 * 109.47253 * 210.00075 * 9 7 5 12 12 H 1.48506 * 109.46874 * 330.00223 * 9 7 5 13 13 C 1.50700 * 109.47020 * 299.99926 * 3 2 1 14 14 C 1.38262 * 119.98980 * 330.00287 * 13 3 2 15 15 C 1.38227 * 120.05195 * 180.02562 * 14 13 3 16 16 C 1.38219 * 120.02402 * 0.25898 * 15 14 13 17 17 C 1.38439 * 119.97325 * 359.41717 * 16 15 14 18 18 F 1.35105 * 120.02463 * 180.29881 * 17 16 15 19 19 C 1.38177 * 119.98534 * 149.97751 * 13 3 2 20 20 H 1.09007 * 109.47084 * 299.99952 * 1 2 3 21 21 H 1.08998 * 109.47227 * 59.99768 * 1 2 3 22 22 H 1.08997 * 109.47385 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46699 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46985 * 299.99595 * 4 3 2 25 25 H 1.08992 * 109.47102 * 60.00217 * 4 3 2 26 26 H 0.96997 * 120.00520 * 180.02562 * 8 7 5 27 27 H 1.07999 * 119.97792 * 359.97438 * 14 13 3 28 28 H 1.08002 * 119.98464 * 179.97438 * 15 14 13 29 29 H 1.08004 * 120.01020 * 179.72204 * 16 15 14 30 30 H 1.08000 * 120.01276 * 359.97438 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5656 2.0533 1.2305 6 1 1.0160 2.9777 1.1314 7 6 1.8605 1.5574 2.4827 8 7 1.4720 2.2097 3.5565 9 14 2.8105 -0.0418 2.6541 10 1 4.2660 0.2494 2.6992 11 1 2.4038 -0.7274 3.9070 12 1 2.5171 -0.9189 1.4922 13 6 1.5656 2.0533 -1.2305 14 6 1.2797 1.3624 -2.3935 15 6 0.8723 2.0471 -3.5230 16 6 0.7553 3.4240 -3.4925 17 6 1.0348 4.1162 -2.3267 18 9 0.9150 5.4615 -2.2940 19 6 1.4432 3.4292 -1.1958 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 3.9788 2.1804 -0.0011 24 1 3.8574 0.6435 0.8892 25 1 3.8567 0.6439 -0.8908 26 1 1.6798 1.8611 4.4375 27 1 1.3756 0.2870 -2.4197 28 1 0.6496 1.5063 -4.4310 29 1 0.4413 3.9591 -4.3766 30 1 1.6657 3.9686 -0.2870 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260653107.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -54.442008 kcal Electronic energy + Delta-G solvation = -15749.876807 eV Core-core repulsion = 13039.390807 eV Total energy + Delta-G solvation = -2710.485999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.43617 -39.21504 -36.70755 -32.90663 -31.59902 -29.97304 -29.14291 -25.61203 -25.03833 -23.05583 -22.04318 -19.82377 -17.22170 -16.73285 -15.84197 -15.47892 -15.16130 -15.00963 -14.55756 -14.16995 -13.52571 -13.34281 -12.80997 -12.67892 -12.30054 -11.78447 -11.67465 -11.54039 -11.19897 -10.84404 -10.60961 -10.32461 -10.20332 -9.85962 -8.98091 -8.69277 -8.42289 -8.14766 -8.08501 -6.20294 -4.31389 1.65335 1.74059 3.30701 3.43697 3.64289 4.10986 4.42993 4.68715 4.90492 5.17888 5.23133 5.37484 5.58085 5.71871 5.98015 6.20184 6.29862 6.34550 6.37021 6.47008 6.53486 6.62001 6.68071 6.80912 6.82111 7.03222 7.15641 7.42038 7.52463 8.09716 8.54099 8.79040 9.42253 10.89328 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.034780 B = 0.010691 C = 0.009363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.868710 B = 2618.483824 C = 2989.679188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.391 6.391 3 C 0.233 3.767 4 C -0.128 4.128 5 C -0.550 4.550 6 H 0.082 0.918 7 C 0.088 3.912 8 N -0.886 5.886 9 Si 0.873 3.127 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.219 1.219 13 C -0.040 4.040 14 C -0.128 4.128 15 C -0.104 4.104 16 C -0.172 4.172 17 C 0.083 3.917 18 F -0.148 7.148 19 C -0.129 4.129 20 H 0.054 0.946 21 H 0.027 0.973 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -1.680 -10.907 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.311 6.311 3 C 0.195 3.805 4 C -0.184 4.184 5 C -0.586 4.586 6 H 0.100 0.900 7 C -0.117 4.117 8 N -0.522 5.522 9 Si 0.702 3.298 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.142 1.142 13 C -0.041 4.041 14 C -0.146 4.146 15 C -0.122 4.122 16 C -0.191 4.191 17 C 0.064 3.936 18 F -0.127 7.127 19 C -0.148 4.148 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.002 -1.784 -10.729 10.876 hybrid contribution 0.190 -0.170 0.314 0.404 sum 0.192 -1.954 -10.415 10.599 Atomic orbital electron populations 1.22417 0.83166 0.99677 1.00647 1.87990 1.18670 1.29995 1.94434 1.18435 0.90714 0.80934 0.90416 1.21926 0.94894 1.01465 1.00164 1.21312 1.38630 1.10005 0.88693 0.89998 1.24965 0.94262 0.97039 0.95460 1.69924 1.44892 1.39216 0.98178 0.87181 0.78920 0.85415 0.78283 1.21385 1.23137 1.14158 1.20634 0.94285 0.93160 0.95989 1.21163 1.00415 1.00654 0.92338 1.20863 0.99875 0.93107 0.98379 1.20950 1.05899 0.95159 0.97083 1.17821 1.03374 0.76763 0.95609 1.91448 1.93973 1.30094 1.97194 1.21366 1.00645 0.95190 0.97595 0.92788 0.95422 0.92318 0.91482 0.92873 0.94081 0.92388 0.85426 0.85921 0.85826 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.14 101.05 1.02 1.78 16 2 O -0.39 -8.73 6.38 -35.23 -0.22 -8.95 16 3 C 0.23 5.25 0.54 -92.92 -0.05 5.20 16 4 C -0.13 -2.70 8.34 37.16 0.31 -2.39 16 5 C -0.55 -14.45 6.74 -34.44 -0.23 -14.68 16 6 H 0.08 2.32 6.28 -52.49 -0.33 2.00 16 7 C 0.09 2.42 5.45 -17.82 -0.10 2.33 16 8 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 9 Si 0.87 21.34 23.91 -169.99 -4.06 17.27 16 10 H -0.29 -6.87 6.87 56.52 0.39 -6.48 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.22 -5.17 5.30 56.52 0.30 -4.87 16 13 C -0.04 -0.81 4.01 -104.64 -0.42 -1.22 16 14 C -0.13 -2.20 7.77 -39.58 -0.31 -2.50 16 15 C -0.10 -1.54 10.04 -39.59 -0.40 -1.94 16 16 C -0.17 -2.65 10.03 -39.51 -0.40 -3.05 16 17 C 0.08 1.50 7.30 -39.42 -0.29 1.21 16 18 F -0.15 -2.67 17.27 2.25 0.04 -2.63 16 19 C -0.13 -2.59 8.87 -39.51 -0.35 -2.94 16 20 H 0.05 1.21 7.15 -51.93 -0.37 0.84 16 21 H 0.03 0.52 6.04 -51.93 -0.31 0.20 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.05 1.18 3.28 -51.93 -0.17 1.01 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.13 2.10 7.39 -52.49 -0.39 1.71 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.15 3.17 6.42 -52.49 -0.34 2.83 16 LS Contribution 245.43 15.07 3.70 3.70 Total: -1.00 -28.70 245.43 -4.26 -32.96 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.27 Total: 1.16 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -1.20 Total: -18.21 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.22 Total: -8.95 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.06 Total: 17.27 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.70 -4.26 -32.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260653107.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.484 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds