Wall clock time and date at job start Mon Mar 30 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02715 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46950 * 119.97971 * 9 8 7 11 11 F 1.39901 * 109.46959 * 359.97438 * 9 8 7 12 12 C 1.50697 * 109.47414 * 239.98076 * 9 8 7 13 13 H 1.08001 * 119.99645 * 359.97438 * 12 9 8 14 14 C 1.37870 * 120.00193 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99984 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99951 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.47137 * 60.00237 * 16 14 12 18 18 H 1.48500 * 109.47308 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47629 * 300.00061 * 16 14 12 20 20 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 21 21 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 22 22 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.03046 * 0.02562 * 4 3 2 24 24 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 25 25 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 27 27 H 1.08999 * 109.46937 * 60.00241 * 10 9 8 28 28 H 1.08994 * 109.47091 * 180.02562 * 10 9 8 29 29 H 1.08998 * 109.47126 * 300.00078 * 10 9 8 30 30 H 0.97000 * 119.99776 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0017 10 6 3.9276 -0.7979 1.2516 11 9 5.6134 0.3514 0.0015 12 6 3.9329 -0.7877 -1.2281 13 1 3.2057 -0.4244 -1.9392 14 6 4.5669 -1.9926 -1.4449 15 7 5.4514 -2.4356 -0.5781 16 14 4.1687 -2.9966 -2.9689 17 1 4.4853 -2.2012 -4.1824 18 1 4.9794 -4.2408 -2.9679 19 1 2.7253 -3.3457 -2.9686 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2128 2.3203 -0.0005 24 1 1.3341 4.5113 -0.0060 25 1 3.7923 4.6380 -0.0014 26 1 5.1344 2.5751 0.0000 27 1 2.8682 -1.0544 1.2517 28 1 4.5229 -1.7109 1.2527 29 1 4.1597 -0.2122 2.1411 30 1 5.8977 -3.2832 -0.7309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260672324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:18 Heat of formation + Delta-G solvation = -61.337026 kcal Electronic energy + Delta-G solvation = -15815.662506 eV Core-core repulsion = 13104.877517 eV Total energy + Delta-G solvation = -2710.784990 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.63680 -39.50640 -36.68256 -33.61244 -31.43923 -29.59790 -28.20083 -26.75649 -25.24645 -22.51462 -21.43184 -19.78242 -17.47821 -16.64014 -15.50646 -15.34185 -15.06207 -14.52809 -13.83161 -13.54395 -13.39039 -13.31978 -12.65623 -12.10281 -11.73190 -11.46084 -11.20224 -11.06614 -10.81696 -10.69102 -10.64254 -10.52165 -10.26618 -10.12463 -9.16449 -8.92562 -8.49752 -8.14450 -7.40680 -5.99531 -4.14744 1.94717 2.06495 3.33157 3.36745 3.40040 3.93851 4.34718 4.47389 5.23858 5.28874 5.39208 5.48239 5.52496 5.62712 5.82941 5.91020 6.02834 6.30746 6.53245 6.68989 6.84505 6.86171 6.91633 7.04053 7.23141 7.41477 7.73118 7.87957 8.02034 8.11692 8.28057 8.86287 9.55243 11.03214 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.011582 C = 0.009772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.354127 B = 2417.067667 C = 2864.748943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.281 6.281 3 C 0.143 3.857 4 C -0.220 4.220 5 C -0.103 4.103 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.101 4.101 9 C 0.281 3.719 10 C -0.154 4.154 11 F -0.228 7.228 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.875 5.875 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.046 0.954 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.014 0.986 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 6.754 1.859 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.193 6.193 3 C 0.097 3.903 4 C -0.239 4.239 5 C -0.121 4.121 6 C -0.182 4.182 7 C -0.103 4.103 8 C -0.102 4.102 9 C 0.263 3.737 10 C -0.211 4.211 11 F -0.209 7.209 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.511 5.511 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.112 0.888 23 H 0.137 0.863 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.147 0.853 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.033 0.967 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.879 6.395 1.904 10.325 hybrid contribution -0.446 -0.309 -0.854 1.012 sum -8.325 6.086 1.050 10.366 Atomic orbital electron populations 1.22978 0.80711 1.03252 1.00230 1.86450 1.19076 1.25910 1.87866 1.18705 0.91637 0.84092 0.95842 1.21096 0.99279 0.92608 1.10931 1.20708 0.94573 0.96391 1.00438 1.20917 0.93821 0.97908 1.05559 1.20943 1.00477 0.91027 0.97830 1.20389 0.91674 0.97317 1.00864 1.17153 0.73194 0.86802 0.96552 1.22258 1.02280 1.02289 0.94305 1.92705 1.36774 1.93455 1.97976 1.21157 1.24771 1.04219 1.06412 0.91873 1.24977 0.94236 0.97068 0.96569 1.69925 1.25668 1.20594 1.34944 0.86559 0.78390 0.79229 0.83210 1.20146 1.21191 1.20064 0.93593 0.93438 0.88801 0.86267 0.86857 0.86753 0.85252 0.92330 0.88859 0.96707 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 101.05 0.99 1.34 16 2 O -0.28 -5.77 7.17 -19.42 -0.14 -5.91 16 3 C 0.14 2.97 6.18 -39.22 -0.24 2.73 16 4 C -0.22 -3.79 9.04 -39.43 -0.36 -4.14 16 5 C -0.10 -1.65 10.04 -39.60 -0.40 -2.04 16 6 C -0.16 -2.79 10.04 -39.56 -0.40 -3.19 16 7 C -0.08 -1.74 9.43 -39.61 -0.37 -2.12 16 8 C -0.10 -2.35 4.74 -104.47 -0.50 -2.84 16 9 C 0.28 7.48 0.97 -92.92 -0.09 7.39 16 10 C -0.15 -3.91 8.49 37.16 0.32 -3.60 16 11 F -0.23 -6.50 15.01 2.25 0.03 -6.47 16 12 C -0.53 -14.95 7.22 -34.44 -0.25 -15.20 16 13 H 0.06 1.80 7.54 -52.49 -0.40 1.40 16 14 C 0.08 2.13 5.27 -17.82 -0.09 2.04 16 15 N -0.87 -25.46 10.99 55.43 0.61 -24.85 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 21 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.12 1.69 6.30 -52.49 -0.33 1.36 16 24 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 25 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 26 H 0.13 2.63 7.16 -52.49 -0.38 2.26 16 27 H 0.06 1.43 6.14 -51.93 -0.32 1.11 16 28 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 254.50 15.07 3.84 3.84 Total: -1.00 -31.10 254.50 -5.43 -36.53 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.36 Total: -0.13 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.39 Total: -19.63 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.61 Total: -24.85 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.14 Total: -5.91 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.03 Total: -6.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.10 -5.43 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.809 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds