Wall clock time and date at job start Mon Mar 30 2020 02:41:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35906 * 116.99822 * 2 1
4 4 C 1.38751 * 120.05390 * 0.02683 * 3 2 1
5 5 C 1.38122 * 119.94559 * 179.97438 * 4 3 2
6 6 C 1.38294 * 120.05263 * 359.97438 * 5 4 3
7 7 C 1.38246 * 120.11248 * 359.74998 * 6 5 4
8 8 C 1.38167 * 120.05318 * 0.50400 * 7 6 5
9 9 C 1.50699 * 120.02706 * 179.77083 * 8 7 6
10 10 C 1.52997 * 109.47265 * 239.72454 * 9 8 7
11 11 F 1.39895 * 109.47254 * 359.72782 * 9 8 7
12 12 C 1.50706 * 109.46817 * 119.72578 * 9 8 7
13 13 H 1.07995 * 120.00167 * 359.72198 * 12 9 8
14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8
15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9
16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9
17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12
18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12
19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12
20 20 H 1.09006 * 109.46680 * 299.99523 * 1 2 3
21 21 H 1.08998 * 109.47639 * 59.99475 * 1 2 3
22 22 H 1.08997 * 109.47114 * 180.02562 * 1 2 3
23 23 H 1.08008 * 120.03120 * 359.97438 * 4 3 2
24 24 H 1.08002 * 119.97641 * 179.97438 * 5 4 3
25 25 H 1.08001 * 119.94407 * 180.02562 * 6 5 4
26 26 H 1.07995 * 119.97215 * 180.25443 * 7 6 5
27 27 H 1.09000 * 109.47140 * 300.00252 * 10 9 8
28 28 H 1.09001 * 109.47230 * 59.99396 * 10 9 8
29 29 H 1.09001 * 109.47375 * 180.02562 * 10 9 8
30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2913 2.3753 0.0006
5 6 1.9207 3.6048 0.0011
6 6 3.3018 3.6759 0.0016
7 6 4.0559 2.5172 0.0068
8 6 3.4311 1.2849 0.0010
9 6 4.2538 0.0223 0.0014
10 6 3.9284 -0.7989 -1.2478
11 9 5.6134 0.3516 0.0019
12 6 3.9322 -0.7862 1.2319
13 1 3.2083 -0.4200 1.9447
14 6 4.5663 -1.9910 1.4502
15 7 5.4519 -2.4343 0.5849
16 14 4.1672 -2.9935 2.9750
17 1 2.7240 -3.3427 2.9742
18 1 4.9780 -4.2377 2.9755
19 1 4.4832 -2.1970 4.1879
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5139 -0.8899
22 1 -0.3633 -1.0276 0.0005
23 1 0.2127 2.3203 0.0006
24 1 1.3338 4.5114 0.0011
25 1 3.7921 4.6382 0.0024
26 1 5.1343 2.5754 0.0113
27 1 2.8690 -1.0555 -1.2482
28 1 4.1607 -0.2141 -2.1378
29 1 4.5230 -1.7124 -1.2473
30 1 5.8981 -3.2817 0.7387
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260672325.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:21
Heat of formation + Delta-G solvation = -61.341070 kcal
Electronic energy + Delta-G solvation = -15815.594872 eV
Core-core repulsion = 13104.809707 eV
Total energy + Delta-G solvation = -2710.785165 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-45.63756 -39.50479 -36.68145 -33.61209 -31.43939 -29.59760 -28.20052 -26.75556
-25.24608 -22.51420 -21.43121 -19.78164 -17.47714 -16.63994 -15.50634 -15.34233
-15.06126 -14.52846 -13.83128 -13.54377 -13.39023 -13.32072 -12.65459 -12.10250
-11.73109 -11.46152 -11.20200 -11.06711 -10.81472 -10.69193 -10.64176 -10.52315
-10.26634 -10.12242 -9.16279 -8.92555 -8.49868 -8.14419 -7.40645 -5.99543
-4.14768 1.94746 2.06486 3.33157 3.36725 3.40036 3.93887 4.34720
4.47392 5.23858 5.28862 5.39199 5.48265 5.52528 5.62756 5.82985
5.91033 6.02865 6.30780 6.53275 6.69060 6.84486 6.86211 6.91634
7.04061 7.23231 7.41506 7.73167 7.88012 8.02010 8.11680 8.28062
8.86254 9.55207 11.03195
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.028578 B = 0.011581 C = 0.009773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.535985 B = 2417.086433 C = 2864.290876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.281 6.281
3 C 0.143 3.857
4 C -0.220 4.220
5 C -0.103 4.103
6 C -0.164 4.164
7 C -0.085 4.085
8 C -0.101 4.101
9 C 0.281 3.719
10 C -0.154 4.154
11 F -0.228 7.228
12 C -0.528 4.528
13 H 0.063 0.937
14 C 0.076 3.924
15 N -0.875 5.875
16 Si 0.899 3.101
17 H -0.275 1.275
18 H -0.286 1.286
19 H -0.276 1.276
20 H 0.047 0.953
21 H 0.045 0.955
22 H 0.094 0.906
23 H 0.119 0.881
24 H 0.113 0.887
25 H 0.114 0.886
26 H 0.130 0.870
27 H 0.058 0.942
28 H 0.014 0.986
29 H 0.093 0.907
30 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.129 6.749 -1.868 10.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.193 6.193
3 C 0.097 3.903
4 C -0.239 4.239
5 C -0.121 4.121
6 C -0.182 4.182
7 C -0.103 4.103
8 C -0.103 4.103
9 C 0.263 3.737
10 C -0.211 4.211
11 F -0.209 7.209
12 C -0.566 4.566
13 H 0.081 0.919
14 C -0.128 4.128
15 N -0.511 5.511
16 Si 0.726 3.274
17 H -0.201 1.201
18 H -0.212 1.212
19 H -0.201 1.201
20 H 0.066 0.934
21 H 0.064 0.936
22 H 0.112 0.888
23 H 0.137 0.863
24 H 0.131 0.869
25 H 0.132 0.868
26 H 0.147 0.853
27 H 0.077 0.923
28 H 0.033 0.967
29 H 0.111 0.889
30 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -7.878 6.391 -1.911 10.323
hybrid contribution -0.444 -0.306 0.856 1.012
sum -8.322 6.085 -1.055 10.364
Atomic orbital electron populations
1.22979 0.80713 1.03252 1.00228 1.86451 1.19075 1.25906 1.87865
1.18708 0.91636 0.84091 0.95835 1.21097 0.99279 0.92607 1.10934
1.20710 0.94572 0.96391 1.00433 1.20918 0.93820 0.97908 1.05569
1.20943 1.00477 0.91026 0.97820 1.20389 0.91677 0.97315 1.00873
1.17151 0.73193 0.86800 0.96560 1.22257 1.02288 1.02280 0.94303
1.92704 1.36780 1.93455 1.97976 1.21159 1.24914 1.04197 1.06294
0.91879 1.24978 0.94209 0.97082 0.96575 1.69922 1.25586 1.20595
1.35019 0.86559 0.78395 0.79227 0.83214 1.20059 1.21189 1.20149
0.93438 0.93594 0.88801 0.86265 0.86857 0.86754 0.85252 0.92329
0.96701 0.88862 0.92701
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.35 9.81 101.05 0.99 1.34 16
2 O -0.28 -5.77 7.18 -19.45 -0.14 -5.91 16
3 C 0.14 2.98 6.18 -39.22 -0.24 2.73 16
4 C -0.22 -3.79 9.04 -39.43 -0.36 -4.14 16
5 C -0.10 -1.64 10.04 -39.60 -0.40 -2.04 16
6 C -0.16 -2.80 10.04 -39.56 -0.40 -3.19 16
7 C -0.08 -1.74 9.43 -39.60 -0.37 -2.12 16
8 C -0.10 -2.35 4.74 -104.47 -0.50 -2.85 16
9 C 0.28 7.48 0.97 -92.92 -0.09 7.39 16
10 C -0.15 -3.91 8.49 37.16 0.32 -3.60 16
11 F -0.23 -6.50 15.01 2.25 0.03 -6.47 16
12 C -0.53 -14.95 7.22 -34.44 -0.25 -15.20 16
13 H 0.06 1.79 7.55 -52.49 -0.40 1.40 16
14 C 0.08 2.13 5.27 -17.82 -0.09 2.04 16
15 N -0.87 -25.45 10.99 55.43 0.61 -24.84 16
16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16
17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16
20 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16
21 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16
22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16
23 H 0.12 1.69 6.30 -52.48 -0.33 1.36 16
24 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16
25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16
26 H 0.13 2.63 7.16 -52.49 -0.38 2.26 16
27 H 0.06 1.43 6.14 -51.93 -0.32 1.11 16
28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
29 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16
30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16
LS Contribution 254.52 15.07 3.84 3.84
Total: -1.00 -31.10 254.52 -5.43 -36.53
By element:
Atomic # 1 Polarization: 3.22 SS G_CDS: -3.36 Total: -0.13 kcal
Atomic # 6 Polarization: -18.24 SS G_CDS: -1.39 Total: -19.63 kcal
Atomic # 7 Polarization: -25.45 SS G_CDS: 0.61 Total: -24.84 kcal
Atomic # 8 Polarization: -5.77 SS G_CDS: -0.14 Total: -5.91 kcal
Atomic # 9 Polarization: -6.50 SS G_CDS: 0.03 Total: -6.47 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal
Total LS contribution 3.84 Total: 3.84 kcal
Total: -31.10 -5.43 -36.53 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260672325.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.814 kcal
(2) G-P(sol) polarization free energy of solvation -31.098 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds