Wall clock time and date at job start Mon Mar 30 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 116.99822 * 2 1 4 4 C 1.38751 * 120.05390 * 0.02683 * 3 2 1 5 5 C 1.38122 * 119.94559 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05263 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.11248 * 359.74998 * 6 5 4 8 8 C 1.38167 * 120.05318 * 0.50400 * 7 6 5 9 9 C 1.50699 * 120.02706 * 179.77083 * 8 7 6 10 10 C 1.52997 * 109.47265 * 239.72454 * 9 8 7 11 11 F 1.39895 * 109.47254 * 359.72782 * 9 8 7 12 12 C 1.50706 * 109.46817 * 119.72578 * 9 8 7 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 H 1.09006 * 109.46680 * 299.99523 * 1 2 3 21 21 H 1.08998 * 109.47639 * 59.99475 * 1 2 3 22 22 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 23 23 H 1.08008 * 120.03120 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97641 * 179.97438 * 5 4 3 25 25 H 1.08001 * 119.94407 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97215 * 180.25443 * 7 6 5 27 27 H 1.09000 * 109.47140 * 300.00252 * 10 9 8 28 28 H 1.09001 * 109.47230 * 59.99396 * 10 9 8 29 29 H 1.09001 * 109.47375 * 180.02562 * 10 9 8 30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5172 0.0068 8 6 3.4311 1.2849 0.0010 9 6 4.2538 0.0223 0.0014 10 6 3.9284 -0.7989 -1.2478 11 9 5.6134 0.3516 0.0019 12 6 3.9322 -0.7862 1.2319 13 1 3.2083 -0.4200 1.9447 14 6 4.5663 -1.9910 1.4502 15 7 5.4519 -2.4343 0.5849 16 14 4.1672 -2.9935 2.9750 17 1 2.7240 -3.3427 2.9742 18 1 4.9780 -4.2377 2.9755 19 1 4.4832 -2.1970 4.1879 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.2127 2.3203 0.0006 24 1 1.3338 4.5114 0.0011 25 1 3.7921 4.6382 0.0024 26 1 5.1343 2.5754 0.0113 27 1 2.8690 -1.0555 -1.2482 28 1 4.1607 -0.2141 -2.1378 29 1 4.5230 -1.7124 -1.2473 30 1 5.8981 -3.2817 0.7387 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260672325.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:21 Heat of formation + Delta-G solvation = -61.341070 kcal Electronic energy + Delta-G solvation = -15815.594872 eV Core-core repulsion = 13104.809707 eV Total energy + Delta-G solvation = -2710.785165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.63756 -39.50479 -36.68145 -33.61209 -31.43939 -29.59760 -28.20052 -26.75556 -25.24608 -22.51420 -21.43121 -19.78164 -17.47714 -16.63994 -15.50634 -15.34233 -15.06126 -14.52846 -13.83128 -13.54377 -13.39023 -13.32072 -12.65459 -12.10250 -11.73109 -11.46152 -11.20200 -11.06711 -10.81472 -10.69193 -10.64176 -10.52315 -10.26634 -10.12242 -9.16279 -8.92555 -8.49868 -8.14419 -7.40645 -5.99543 -4.14768 1.94746 2.06486 3.33157 3.36725 3.40036 3.93887 4.34720 4.47392 5.23858 5.28862 5.39199 5.48265 5.52528 5.62756 5.82985 5.91033 6.02865 6.30780 6.53275 6.69060 6.84486 6.86211 6.91634 7.04061 7.23231 7.41506 7.73167 7.88012 8.02010 8.11680 8.28062 8.86254 9.55207 11.03195 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.028578 B = 0.011581 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.535985 B = 2417.086433 C = 2864.290876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.281 6.281 3 C 0.143 3.857 4 C -0.220 4.220 5 C -0.103 4.103 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.101 4.101 9 C 0.281 3.719 10 C -0.154 4.154 11 F -0.228 7.228 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.875 5.875 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.093 0.907 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.129 6.749 -1.868 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.193 6.193 3 C 0.097 3.903 4 C -0.239 4.239 5 C -0.121 4.121 6 C -0.182 4.182 7 C -0.103 4.103 8 C -0.103 4.103 9 C 0.263 3.737 10 C -0.211 4.211 11 F -0.209 7.209 12 C -0.566 4.566 13 H 0.081 0.919 14 C -0.128 4.128 15 N -0.511 5.511 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.112 0.888 23 H 0.137 0.863 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.147 0.853 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.878 6.391 -1.911 10.323 hybrid contribution -0.444 -0.306 0.856 1.012 sum -8.322 6.085 -1.055 10.364 Atomic orbital electron populations 1.22979 0.80713 1.03252 1.00228 1.86451 1.19075 1.25906 1.87865 1.18708 0.91636 0.84091 0.95835 1.21097 0.99279 0.92607 1.10934 1.20710 0.94572 0.96391 1.00433 1.20918 0.93820 0.97908 1.05569 1.20943 1.00477 0.91026 0.97820 1.20389 0.91677 0.97315 1.00873 1.17151 0.73193 0.86800 0.96560 1.22257 1.02288 1.02280 0.94303 1.92704 1.36780 1.93455 1.97976 1.21159 1.24914 1.04197 1.06294 0.91879 1.24978 0.94209 0.97082 0.96575 1.69922 1.25586 1.20595 1.35019 0.86559 0.78395 0.79227 0.83214 1.20059 1.21189 1.20149 0.93438 0.93594 0.88801 0.86265 0.86857 0.86754 0.85252 0.92329 0.96701 0.88862 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 101.05 0.99 1.34 16 2 O -0.28 -5.77 7.18 -19.45 -0.14 -5.91 16 3 C 0.14 2.98 6.18 -39.22 -0.24 2.73 16 4 C -0.22 -3.79 9.04 -39.43 -0.36 -4.14 16 5 C -0.10 -1.64 10.04 -39.60 -0.40 -2.04 16 6 C -0.16 -2.80 10.04 -39.56 -0.40 -3.19 16 7 C -0.08 -1.74 9.43 -39.60 -0.37 -2.12 16 8 C -0.10 -2.35 4.74 -104.47 -0.50 -2.85 16 9 C 0.28 7.48 0.97 -92.92 -0.09 7.39 16 10 C -0.15 -3.91 8.49 37.16 0.32 -3.60 16 11 F -0.23 -6.50 15.01 2.25 0.03 -6.47 16 12 C -0.53 -14.95 7.22 -34.44 -0.25 -15.20 16 13 H 0.06 1.79 7.55 -52.49 -0.40 1.40 16 14 C 0.08 2.13 5.27 -17.82 -0.09 2.04 16 15 N -0.87 -25.45 10.99 55.43 0.61 -24.84 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 21 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 22 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.12 1.69 6.30 -52.48 -0.33 1.36 16 24 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.13 2.63 7.16 -52.49 -0.38 2.26 16 27 H 0.06 1.43 6.14 -51.93 -0.32 1.11 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 254.52 15.07 3.84 3.84 Total: -1.00 -31.10 254.52 -5.43 -36.53 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -3.36 Total: -0.13 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.39 Total: -19.63 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.61 Total: -24.84 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.14 Total: -5.91 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.03 Total: -6.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.10 -5.43 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672325.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.814 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds