Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 116.99822 * 2 1 4 4 C 1.38751 * 120.05390 * 0.02683 * 3 2 1 5 5 C 1.38122 * 119.94559 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05263 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.11248 * 359.74998 * 6 5 4 8 8 C 1.38167 * 120.05318 * 0.50400 * 7 6 5 9 9 C 1.50699 * 120.02706 * 179.77083 * 8 7 6 10 10 C 1.52997 * 109.47265 * 239.72454 * 9 8 7 11 11 F 1.39895 * 109.47254 * 359.72782 * 9 8 7 12 12 C 1.50706 * 109.46817 * 119.72578 * 9 8 7 13 13 H 1.07995 * 120.00167 * 359.72198 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 H 1.09006 * 109.46680 * 299.99523 * 1 2 3 21 21 H 1.08998 * 109.47639 * 59.99475 * 1 2 3 22 22 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 23 23 H 1.08008 * 120.03120 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97641 * 179.97438 * 5 4 3 25 25 H 1.08001 * 119.94407 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97215 * 180.25443 * 7 6 5 27 27 H 1.09000 * 109.47140 * 300.00252 * 10 9 8 28 28 H 1.09001 * 109.47230 * 59.99396 * 10 9 8 29 29 H 1.09001 * 109.47375 * 180.02562 * 10 9 8 30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 4.0559 2.5172 0.0068 8 6 3.4311 1.2849 0.0010 9 6 4.2538 0.0223 0.0014 10 6 3.9284 -0.7989 -1.2478 11 9 5.6134 0.3516 0.0019 12 6 3.9322 -0.7862 1.2319 13 1 3.2083 -0.4200 1.9447 14 6 4.5663 -1.9910 1.4502 15 7 5.4519 -2.4343 0.5849 16 14 4.1672 -2.9935 2.9750 17 1 2.7240 -3.3427 2.9742 18 1 4.9780 -4.2377 2.9755 19 1 4.4832 -2.1970 4.1879 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.2127 2.3203 0.0006 24 1 1.3338 4.5114 0.0011 25 1 3.7921 4.6382 0.0024 26 1 5.1343 2.5754 0.0113 27 1 2.8690 -1.0555 -1.2482 28 1 4.1607 -0.2141 -2.1378 29 1 4.5230 -1.7124 -1.2473 30 1 5.8981 -3.2817 0.7387 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260672325.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = -79.875637 kcal Electronic energy + Delta-G solvation = -15816.398591 eV Core-core repulsion = 13104.809707 eV Total energy + Delta-G solvation = -2711.588884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.76992 -40.92704 -38.07483 -35.60158 -33.26706 -31.02333 -29.89268 -27.96601 -27.38437 -24.18736 -22.82387 -21.54184 -18.95690 -18.64171 -17.21254 -16.83819 -16.41715 -16.33814 -15.37581 -15.24892 -15.19087 -15.10705 -14.21514 -13.63830 -13.48681 -13.17905 -12.94326 -12.76894 -12.63827 -12.54258 -12.33669 -12.23361 -11.89719 -11.75100 -11.06509 -10.89026 -10.62527 -9.64882 -8.88440 -8.11337 -6.34747 0.51285 0.65484 1.39428 1.42364 1.50129 2.40046 2.63856 2.96718 3.14047 3.91885 4.06344 4.26141 4.37854 4.48722 4.52399 4.59611 4.74506 4.78838 4.79413 4.88752 5.04560 5.14159 5.40096 5.56079 5.58812 5.68891 5.83026 5.96127 6.06287 6.22651 6.68015 6.76047 7.38420 8.90061 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.028578 B = 0.011581 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.535985 B = 2417.086433 C = 2864.290876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.103 4.103 8 C -0.146 4.146 9 C 0.267 3.733 10 C -0.142 4.142 11 F -0.248 7.248 12 C -0.539 4.539 13 H 0.054 0.946 14 C 0.025 3.975 15 N -0.905 5.905 16 Si 0.962 3.038 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.274 1.274 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.105 0.895 23 H 0.155 0.845 24 H 0.161 0.839 25 H 0.149 0.851 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 8.372 -1.336 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.177 4.177 7 C -0.122 4.122 8 C -0.147 4.147 9 C 0.249 3.751 10 C -0.199 4.199 11 F -0.229 7.229 12 C -0.577 4.577 13 H 0.072 0.928 14 C -0.176 4.176 15 N -0.542 5.542 16 Si 0.787 3.213 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.199 1.199 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.124 0.876 23 H 0.172 0.828 24 H 0.179 0.821 25 H 0.166 0.834 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.187 8.021 -1.384 13.040 hybrid contribution 0.198 -0.726 0.658 1.000 sum -9.989 7.295 -0.726 12.391 Atomic orbital electron populations 1.23299 0.77872 1.04796 1.02021 1.86363 1.22177 1.26564 1.88047 1.18863 0.91094 0.85444 0.96395 1.21506 1.00900 0.91671 1.09175 1.21279 0.94332 0.97691 0.97262 1.21275 0.94572 0.97849 1.04030 1.21009 1.00310 0.91815 0.99025 1.20211 0.92865 0.96417 1.05198 1.17293 0.72702 0.89055 0.96048 1.22086 1.01988 1.01088 0.94773 1.92643 1.38540 1.93725 1.98014 1.21369 1.24659 1.04783 1.06916 0.92817 1.25810 0.94086 0.98165 0.99568 1.70058 1.26510 1.20990 1.36678 0.85563 0.78678 0.77730 0.79367 1.18958 1.20466 1.19930 0.91910 0.91287 0.87638 0.82786 0.82148 0.83373 0.86635 0.91782 0.95823 0.91564 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 9.81 113.37 1.11 1.50 16 2 O -0.32 -12.87 7.18 -92.49 -0.66 -13.54 16 3 C 0.13 5.18 6.18 22.51 0.14 5.32 16 4 C -0.21 -6.57 9.04 22.36 0.20 -6.37 16 5 C -0.09 -2.40 10.04 22.26 0.22 -2.17 16 6 C -0.16 -4.96 10.04 22.28 0.22 -4.74 16 7 C -0.10 -4.25 9.43 22.25 0.21 -4.04 16 8 C -0.15 -6.84 4.74 -19.77 -0.09 -6.93 16 9 C 0.27 14.71 0.97 -12.29 -0.01 14.70 16 10 C -0.14 -7.49 8.49 71.98 0.61 -6.88 16 11 F -0.25 -14.82 15.01 44.97 0.68 -14.15 16 12 C -0.54 -31.40 7.22 25.60 0.18 -31.21 16 13 H 0.05 3.13 7.55 -2.91 -0.02 3.11 16 14 C 0.02 1.42 5.27 84.66 0.45 1.87 16 15 N -0.91 -54.28 10.99 21.45 0.24 -54.04 16 16 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 H 0.06 1.45 7.66 -2.38 -0.02 1.43 16 21 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 22 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.15 3.57 6.30 -2.91 -0.02 3.55 16 24 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 25 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.12 4.88 7.16 -2.91 -0.02 4.86 16 27 H 0.06 3.23 6.14 -2.39 -0.01 3.21 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -69.69 254.52 6.66 -63.03 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.14 Total: 10.66 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.25 Total: -38.97 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.24 Total: -54.04 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.66 Total: -13.54 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 0.68 Total: -14.15 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -69.69 6.66 -63.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672325.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.842 kcal (2) G-P(sol) polarization free energy of solvation -69.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds