Wall clock time and date at job start Mon Mar 30 2020 02:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35906 * 116.99822 * 2 1
4 4 C 1.38751 * 120.05390 * 0.02683 * 3 2 1
5 5 C 1.38122 * 119.94559 * 179.97438 * 4 3 2
6 6 C 1.38294 * 120.05263 * 359.97438 * 5 4 3
7 7 C 1.38246 * 120.11248 * 359.74998 * 6 5 4
8 8 C 1.38167 * 120.05318 * 0.50400 * 7 6 5
9 9 C 1.50699 * 120.02706 * 179.77083 * 8 7 6
10 10 C 1.52997 * 109.47265 * 239.72454 * 9 8 7
11 11 F 1.39895 * 109.47254 * 359.72782 * 9 8 7
12 12 C 1.50706 * 109.46817 * 119.72578 * 9 8 7
13 13 H 1.07995 * 120.00167 * 359.72198 * 12 9 8
14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8
15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9
16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9
17 17 H 1.48490 * 109.47405 * 60.00219 * 16 14 12
18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12
19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12
20 20 H 1.09006 * 109.46680 * 299.99523 * 1 2 3
21 21 H 1.08998 * 109.47639 * 59.99475 * 1 2 3
22 22 H 1.08997 * 109.47114 * 180.02562 * 1 2 3
23 23 H 1.08008 * 120.03120 * 359.97438 * 4 3 2
24 24 H 1.08002 * 119.97641 * 179.97438 * 5 4 3
25 25 H 1.08001 * 119.94407 * 180.02562 * 6 5 4
26 26 H 1.07995 * 119.97215 * 180.25443 * 7 6 5
27 27 H 1.09000 * 109.47140 * 300.00252 * 10 9 8
28 28 H 1.09001 * 109.47230 * 59.99396 * 10 9 8
29 29 H 1.09001 * 109.47375 * 180.02562 * 10 9 8
30 30 H 0.96996 * 119.99730 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2110 0.0000
4 6 1.2913 2.3753 0.0006
5 6 1.9207 3.6048 0.0011
6 6 3.3018 3.6759 0.0016
7 6 4.0559 2.5172 0.0068
8 6 3.4311 1.2849 0.0010
9 6 4.2538 0.0223 0.0014
10 6 3.9284 -0.7989 -1.2478
11 9 5.6134 0.3516 0.0019
12 6 3.9322 -0.7862 1.2319
13 1 3.2083 -0.4200 1.9447
14 6 4.5663 -1.9910 1.4502
15 7 5.4519 -2.4343 0.5849
16 14 4.1672 -2.9935 2.9750
17 1 2.7240 -3.3427 2.9742
18 1 4.9780 -4.2377 2.9755
19 1 4.4832 -2.1970 4.1879
20 1 -0.3633 0.5138 0.8901
21 1 -0.3634 0.5139 -0.8899
22 1 -0.3633 -1.0276 0.0005
23 1 0.2127 2.3203 0.0006
24 1 1.3338 4.5114 0.0011
25 1 3.7921 4.6382 0.0024
26 1 5.1343 2.5754 0.0113
27 1 2.8690 -1.0555 -1.2482
28 1 4.1607 -0.2141 -2.1378
29 1 4.5230 -1.7124 -1.2473
30 1 5.8981 -3.2817 0.7387
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260672325.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:20
Heat of formation + Delta-G solvation = -79.875637 kcal
Electronic energy + Delta-G solvation = -15816.398591 eV
Core-core repulsion = 13104.809707 eV
Total energy + Delta-G solvation = -2711.588884 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-47.76992 -40.92704 -38.07483 -35.60158 -33.26706 -31.02333 -29.89268 -27.96601
-27.38437 -24.18736 -22.82387 -21.54184 -18.95690 -18.64171 -17.21254 -16.83819
-16.41715 -16.33814 -15.37581 -15.24892 -15.19087 -15.10705 -14.21514 -13.63830
-13.48681 -13.17905 -12.94326 -12.76894 -12.63827 -12.54258 -12.33669 -12.23361
-11.89719 -11.75100 -11.06509 -10.89026 -10.62527 -9.64882 -8.88440 -8.11337
-6.34747 0.51285 0.65484 1.39428 1.42364 1.50129 2.40046 2.63856
2.96718 3.14047 3.91885 4.06344 4.26141 4.37854 4.48722 4.52399
4.59611 4.74506 4.78838 4.79413 4.88752 5.04560 5.14159 5.40096
5.56079 5.58812 5.68891 5.83026 5.96127 6.06287 6.22651 6.68015
6.76047 7.38420 8.90061
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.028578 B = 0.011581 C = 0.009773
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.535985 B = 2417.086433 C = 2864.290876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.318 6.318
3 C 0.128 3.872
4 C -0.214 4.214
5 C -0.088 4.088
6 C -0.159 4.159
7 C -0.103 4.103
8 C -0.146 4.146
9 C 0.267 3.733
10 C -0.142 4.142
11 F -0.248 7.248
12 C -0.539 4.539
13 H 0.054 0.946
14 C 0.025 3.975
15 N -0.905 5.905
16 Si 0.962 3.038
17 H -0.265 1.265
18 H -0.280 1.280
19 H -0.274 1.274
20 H 0.062 0.938
21 H 0.069 0.931
22 H 0.105 0.895
23 H 0.155 0.845
24 H 0.161 0.839
25 H 0.149 0.851
26 H 0.116 0.884
27 H 0.063 0.937
28 H 0.023 0.977
29 H 0.066 0.934
30 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.424 8.372 -1.336 13.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.232 6.232
3 C 0.082 3.918
4 C -0.233 4.233
5 C -0.106 4.106
6 C -0.177 4.177
7 C -0.122 4.122
8 C -0.147 4.147
9 C 0.249 3.751
10 C -0.199 4.199
11 F -0.229 7.229
12 C -0.577 4.577
13 H 0.072 0.928
14 C -0.176 4.176
15 N -0.542 5.542
16 Si 0.787 3.213
17 H -0.190 1.190
18 H -0.205 1.205
19 H -0.199 1.199
20 H 0.081 0.919
21 H 0.087 0.913
22 H 0.124 0.876
23 H 0.172 0.828
24 H 0.179 0.821
25 H 0.166 0.834
26 H 0.134 0.866
27 H 0.082 0.918
28 H 0.042 0.958
29 H 0.084 0.916
30 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -10.187 8.021 -1.384 13.040
hybrid contribution 0.198 -0.726 0.658 1.000
sum -9.989 7.295 -0.726 12.391
Atomic orbital electron populations
1.23299 0.77872 1.04796 1.02021 1.86363 1.22177 1.26564 1.88047
1.18863 0.91094 0.85444 0.96395 1.21506 1.00900 0.91671 1.09175
1.21279 0.94332 0.97691 0.97262 1.21275 0.94572 0.97849 1.04030
1.21009 1.00310 0.91815 0.99025 1.20211 0.92865 0.96417 1.05198
1.17293 0.72702 0.89055 0.96048 1.22086 1.01988 1.01088 0.94773
1.92643 1.38540 1.93725 1.98014 1.21369 1.24659 1.04783 1.06916
0.92817 1.25810 0.94086 0.98165 0.99568 1.70058 1.26510 1.20990
1.36678 0.85563 0.78678 0.77730 0.79367 1.18958 1.20466 1.19930
0.91910 0.91287 0.87638 0.82786 0.82148 0.83373 0.86635 0.91782
0.95823 0.91564 0.92669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.39 9.81 113.37 1.11 1.50 16
2 O -0.32 -12.87 7.18 -92.49 -0.66 -13.54 16
3 C 0.13 5.18 6.18 22.51 0.14 5.32 16
4 C -0.21 -6.57 9.04 22.36 0.20 -6.37 16
5 C -0.09 -2.40 10.04 22.26 0.22 -2.17 16
6 C -0.16 -4.96 10.04 22.28 0.22 -4.74 16
7 C -0.10 -4.25 9.43 22.25 0.21 -4.04 16
8 C -0.15 -6.84 4.74 -19.77 -0.09 -6.93 16
9 C 0.27 14.71 0.97 -12.29 -0.01 14.70 16
10 C -0.14 -7.49 8.49 71.98 0.61 -6.88 16
11 F -0.25 -14.82 15.01 44.97 0.68 -14.15 16
12 C -0.54 -31.40 7.22 25.60 0.18 -31.21 16
13 H 0.05 3.13 7.55 -2.91 -0.02 3.11 16
14 C 0.02 1.42 5.27 84.66 0.45 1.87 16
15 N -0.91 -54.28 10.99 21.45 0.24 -54.04 16
16 Si 0.96 44.97 29.54 68.60 2.03 47.00 16
17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16
18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
20 H 0.06 1.45 7.66 -2.38 -0.02 1.43 16
21 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16
22 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16
23 H 0.15 3.57 6.30 -2.91 -0.02 3.55 16
24 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16
25 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16
26 H 0.12 4.88 7.16 -2.91 -0.02 4.86 16
27 H 0.06 3.23 6.14 -2.39 -0.01 3.21 16
28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16
29 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16
30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16
Total: -1.00 -69.69 254.52 6.66 -63.03
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: 1.14 Total: 10.66 kcal
Atomic # 6 Polarization: -42.21 SS G_CDS: 3.25 Total: -38.97 kcal
Atomic # 7 Polarization: -54.28 SS G_CDS: 0.24 Total: -54.04 kcal
Atomic # 8 Polarization: -12.87 SS G_CDS: -0.66 Total: -13.54 kcal
Atomic # 9 Polarization: -14.82 SS G_CDS: 0.68 Total: -14.15 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -69.69 6.66 -63.03 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260672325.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.842 kcal
(2) G-P(sol) polarization free energy of solvation -69.691 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.876 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds