Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37776 * 119.99633 * 2 1 4 4 C 1.35652 * 126.81959 * 359.69026 * 3 2 1 5 5 C 1.46617 * 106.84602 * 179.86679 * 4 3 2 6 6 O 1.21549 * 125.55121 * 180.16247 * 5 4 3 7 7 N 1.34427 * 108.90396 * 0.40780 * 5 4 3 8 8 C 1.46498 * 125.08418 * 179.73337 * 7 5 4 9 9 H 1.09002 * 109.46655 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47035 * 300.02515 * 8 7 5 11 11 C 1.50695 * 109.46953 * 60.02576 * 8 7 5 12 12 H 1.07999 * 120.00290 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99716 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00578 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99958 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47133 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47529 * 119.99939 * 15 13 11 18 18 H 1.48504 * 109.47138 * 239.99985 * 15 13 11 19 19 C 1.34550 * 109.83487 * 359.75648 * 7 5 4 20 20 O 1.21335 * 125.97432 * 179.97438 * 19 7 5 21 21 H 1.09001 * 109.46577 * 60.00116 * 1 2 3 22 22 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47212 * 300.00042 * 1 2 3 24 24 H 0.96995 * 120.00050 * 179.72428 * 2 1 3 25 25 H 1.08006 * 126.57369 * 359.95479 * 4 3 2 26 26 H 1.08997 * 109.47207 * 180.02562 * 10 8 7 27 27 H 1.09000 * 109.47299 * 299.99802 * 10 8 7 28 28 H 1.08994 * 109.47510 * 59.99951 * 10 8 7 29 29 H 0.96997 * 120.00549 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1539 1.1932 0.0000 4 6 1.6198 2.4402 -0.0059 5 6 2.7425 3.3832 0.0001 6 8 2.6475 4.5950 0.0001 7 7 3.8939 2.6896 0.0001 8 6 5.2338 3.2819 -0.0003 9 1 5.9816 2.4889 -0.0006 10 6 5.4082 4.1479 -1.2495 11 6 5.4064 4.1347 1.2302 12 1 4.5989 4.2259 1.9416 13 6 6.5951 4.7984 1.4477 14 7 7.5786 4.6870 0.5818 15 14 6.8093 5.8549 2.9733 16 1 5.5647 5.8142 3.7824 17 1 7.9421 5.3349 3.7805 18 1 7.0912 7.2559 2.5697 19 6 3.6319 1.3698 0.0001 20 8 4.4562 0.4795 -0.0003 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9500 -0.8400 0.0040 25 1 0.5691 2.6903 -0.0122 26 1 6.4052 4.5883 -1.2500 27 1 5.2834 3.5311 -2.1395 28 1 4.6604 4.9409 -1.2492 29 1 8.4147 5.1542 0.7346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260729089.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -25.962920 kcal Electronic energy + Delta-G solvation = -15456.121836 eV Core-core repulsion = 12766.790744 eV Total energy + Delta-G solvation = -2689.331092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37288 -37.80592 -36.68771 -35.15776 -33.77101 -31.30374 -28.50788 -26.76982 -25.24228 -23.68323 -22.18673 -20.26235 -19.21635 -17.07906 -16.51451 -16.01388 -15.58498 -15.33616 -14.72127 -14.18341 -14.07516 -13.63908 -13.24008 -13.12071 -12.65034 -12.37744 -11.76584 -11.27897 -11.06510 -10.86115 -10.83497 -10.44945 -10.21934 -9.78985 -9.66362 -9.16183 -8.49714 -8.41256 -7.79131 -6.10186 -4.16438 0.86687 2.87497 3.22526 3.30169 3.37155 3.43011 3.62787 3.81115 4.40993 4.47842 4.94080 5.21879 5.23685 5.30179 5.48470 5.53505 6.10759 6.51163 6.67192 6.87962 6.91003 6.93597 7.32854 7.36165 7.63358 7.86104 7.95346 8.02128 8.22659 8.62131 8.86723 9.48956 10.96315 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.008216 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.359546 B = 3407.094304 C = 3530.605786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.703 5.703 3 C 0.154 3.846 4 C -0.308 4.308 5 C 0.562 3.438 6 O -0.466 6.466 7 N -0.559 5.559 8 C 0.264 3.736 9 H 0.063 0.937 10 C -0.153 4.153 11 C -0.519 4.519 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.905 3.095 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.281 1.281 19 C 0.553 3.447 20 O -0.480 6.480 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.061 0.939 24 H 0.411 0.589 25 H 0.160 0.840 26 H 0.100 0.900 27 H 0.011 0.989 28 H 0.047 0.953 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 -8.264 -1.785 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.329 5.329 3 C 0.041 3.959 4 C -0.342 4.342 5 C 0.352 3.648 6 O -0.338 6.338 7 N -0.299 5.299 8 C 0.167 3.833 9 H 0.081 0.919 10 C -0.211 4.211 11 C -0.557 4.557 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.529 5.529 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.207 1.207 19 C 0.338 3.662 20 O -0.353 6.353 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.246 0.754 25 H 0.177 0.823 26 H 0.119 0.881 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.693 -7.956 -1.820 14.260 hybrid contribution 0.232 0.195 0.797 0.853 sum -11.461 -7.761 -1.023 13.880 Atomic orbital electron populations 1.21716 0.78586 1.02918 1.02162 1.43573 1.06175 1.05060 1.78056 1.20584 0.92730 0.88222 0.94355 1.23241 1.00047 0.90761 1.20170 1.18396 0.83390 0.87948 0.75075 1.90731 1.86195 1.13179 1.43685 1.47265 1.11358 1.06321 1.64946 1.19231 0.74390 0.93615 0.96038 0.91932 1.22129 1.05004 0.99464 0.94502 1.21211 0.99991 1.28910 1.05635 0.91920 1.24844 0.95375 0.96301 0.97129 1.69869 1.04574 1.43077 1.35355 0.86316 0.78077 0.79946 0.82389 1.19654 1.20907 1.20736 1.18936 0.87571 0.83884 0.75780 1.90715 1.53831 1.45343 1.45446 0.92065 0.90270 0.92054 0.75426 0.82257 0.88145 0.96944 0.93382 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.58 59.85 0.63 1.29 15 2 N -0.70 -7.80 5.84 -63.73 -0.37 -8.17 15 3 C 0.15 2.40 7.28 -81.72 -0.59 1.81 15 4 C -0.31 -4.98 10.42 -37.13 -0.39 -5.37 15 5 C 0.56 12.18 7.27 -13.04 -0.09 12.08 15 6 O -0.47 -11.49 16.23 5.32 0.09 -11.40 15 7 N -0.56 -12.85 2.52 -111.82 -0.28 -13.14 15 8 C 0.26 7.00 2.80 -69.09 -0.19 6.81 15 9 H 0.06 1.78 7.65 -51.93 -0.40 1.38 15 10 C -0.15 -3.88 8.98 37.16 0.33 -3.55 15 11 C -0.52 -14.80 8.15 -34.44 -0.28 -15.08 15 12 H 0.06 1.83 7.70 -52.49 -0.40 1.43 15 13 C 0.07 1.85 5.30 -17.82 -0.09 1.75 15 14 N -0.89 -25.41 11.32 55.43 0.63 -24.79 15 15 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 15 16 H -0.27 -6.60 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 19 C 0.55 11.24 8.10 -11.97 -0.10 11.14 15 20 O -0.48 -10.59 17.50 5.51 0.10 -10.49 15 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 15 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.41 4.07 8.95 -40.82 -0.37 3.71 15 25 H 0.16 2.06 7.87 -52.48 -0.41 1.65 15 26 H 0.10 2.71 6.07 -51.93 -0.32 2.40 15 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 15 28 H 0.05 1.24 6.89 -51.93 -0.36 0.88 15 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -32.30 259.14 -4.81 -37.11 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -3.08 Total: -0.83 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -0.77 Total: 10.88 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.03 Total: -46.10 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.30 -4.81 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729089.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.152 kcal (2) G-P(sol) polarization free energy of solvation -32.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds