Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37776 * 119.99633 * 2 1 4 4 C 1.35652 * 126.81959 * 359.69026 * 3 2 1 5 5 C 1.46617 * 106.84602 * 179.86679 * 4 3 2 6 6 O 1.21549 * 125.55121 * 180.16247 * 5 4 3 7 7 N 1.34427 * 108.90396 * 0.40780 * 5 4 3 8 8 C 1.46498 * 125.08418 * 179.73337 * 7 5 4 9 9 H 1.09002 * 109.46655 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47035 * 300.02515 * 8 7 5 11 11 C 1.50695 * 109.46953 * 60.02576 * 8 7 5 12 12 H 1.07999 * 120.00290 * 0.02562 * 11 8 7 13 13 C 1.37874 * 119.99716 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00578 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99958 * 180.02562 * 13 11 8 16 16 H 1.48504 * 109.47133 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47529 * 119.99939 * 15 13 11 18 18 H 1.48504 * 109.47138 * 239.99985 * 15 13 11 19 19 C 1.34550 * 109.83487 * 359.75648 * 7 5 4 20 20 O 1.21335 * 125.97432 * 179.97438 * 19 7 5 21 21 H 1.09001 * 109.46577 * 60.00116 * 1 2 3 22 22 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47212 * 300.00042 * 1 2 3 24 24 H 0.96995 * 120.00050 * 179.72428 * 2 1 3 25 25 H 1.08006 * 126.57369 * 359.95479 * 4 3 2 26 26 H 1.08997 * 109.47207 * 180.02562 * 10 8 7 27 27 H 1.09000 * 109.47299 * 299.99802 * 10 8 7 28 28 H 1.08994 * 109.47510 * 59.99951 * 10 8 7 29 29 H 0.96997 * 120.00549 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1539 1.1932 0.0000 4 6 1.6198 2.4402 -0.0059 5 6 2.7425 3.3832 0.0001 6 8 2.6475 4.5950 0.0001 7 7 3.8939 2.6896 0.0001 8 6 5.2338 3.2819 -0.0003 9 1 5.9816 2.4889 -0.0006 10 6 5.4082 4.1479 -1.2495 11 6 5.4064 4.1347 1.2302 12 1 4.5989 4.2259 1.9416 13 6 6.5951 4.7984 1.4477 14 7 7.5786 4.6870 0.5818 15 14 6.8093 5.8549 2.9733 16 1 5.5647 5.8142 3.7824 17 1 7.9421 5.3349 3.7805 18 1 7.0912 7.2559 2.5697 19 6 3.6319 1.3698 0.0001 20 8 4.4562 0.4795 -0.0003 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9500 -0.8400 0.0040 25 1 0.5691 2.6903 -0.0122 26 1 6.4052 4.5883 -1.2500 27 1 5.2834 3.5311 -2.1395 28 1 4.6604 4.9409 -1.2492 29 1 8.4147 5.1542 0.7346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260729089.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = -49.891735 kcal Electronic energy + Delta-G solvation = -15457.159467 eV Core-core repulsion = 12766.790744 eV Total energy + Delta-G solvation = -2690.368723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.98889 -39.49814 -37.89914 -36.97726 -35.59809 -33.10872 -30.16323 -27.73686 -27.41773 -25.13220 -24.03721 -21.64470 -20.92169 -18.77175 -18.28315 -17.67961 -17.21853 -16.83377 -16.31549 -15.68681 -15.29974 -15.01319 -14.85538 -14.74453 -14.54950 -13.80322 -13.30760 -13.04105 -12.91171 -12.81641 -12.44243 -12.27163 -11.96257 -11.61488 -11.49703 -11.01540 -10.58493 -10.37850 -8.89385 -8.25029 -6.39699 -0.60834 1.36925 1.38962 1.48359 1.56509 1.76101 2.14753 2.28081 2.39336 3.03542 3.07573 3.89886 4.27341 4.46792 4.57141 4.65155 4.73333 4.81297 4.89732 5.00170 5.02758 5.27825 5.50193 5.73214 5.83713 5.92688 6.25288 6.38458 6.45007 6.61592 6.96123 7.30297 8.81072 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.008216 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.359546 B = 3407.094304 C = 3530.605786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.680 5.680 3 C 0.185 3.815 4 C -0.306 4.306 5 C 0.549 3.451 6 O -0.511 6.511 7 N -0.578 5.578 8 C 0.267 3.733 9 H 0.033 0.967 10 C -0.137 4.137 11 C -0.540 4.540 12 H 0.047 0.953 13 C 0.021 3.979 14 N -0.912 5.912 15 Si 0.968 3.032 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.273 1.273 19 C 0.544 3.456 20 O -0.504 6.504 21 H 0.073 0.927 22 H 0.113 0.887 23 H 0.070 0.930 24 H 0.418 0.582 25 H 0.199 0.801 26 H 0.081 0.919 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -9.409 -1.349 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.304 5.304 3 C 0.068 3.932 4 C -0.341 4.341 5 C 0.343 3.657 6 O -0.386 6.386 7 N -0.318 5.318 8 C 0.167 3.833 9 H 0.051 0.949 10 C -0.196 4.196 11 C -0.578 4.578 12 H 0.066 0.934 13 C -0.179 4.179 14 N -0.550 5.550 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.196 1.196 18 H -0.199 1.199 19 C 0.331 3.669 20 O -0.379 6.379 21 H 0.092 0.908 22 H 0.131 0.869 23 H 0.089 0.911 24 H 0.255 0.745 25 H 0.216 0.784 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.777 -9.173 -1.393 16.610 hybrid contribution 0.870 0.381 0.631 1.140 sum -12.907 -8.792 -0.762 15.636 Atomic orbital electron populations 1.22137 0.75345 1.05645 1.03139 1.43942 1.08012 1.03659 1.74834 1.20036 0.89353 0.89898 0.93909 1.23063 0.99780 0.88725 1.22493 1.19273 0.84249 0.88200 0.73950 1.90691 1.86699 1.15052 1.46133 1.47254 1.10782 1.07908 1.65829 1.18846 0.76055 0.92587 0.95787 0.94889 1.21911 1.03406 0.99175 0.95071 1.21348 1.00024 1.30059 1.06379 0.93438 1.25651 0.94957 0.97277 1.00039 1.69959 1.04923 1.43467 1.36643 0.85359 0.78066 0.78472 0.78864 1.19857 1.19625 1.19883 1.19644 0.89995 0.82642 0.74592 1.90692 1.55355 1.45646 1.46162 0.90836 0.86851 0.91115 0.74505 0.78359 0.89996 0.95109 0.94392 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.58 127.77 1.35 2.09 15 2 N -0.68 -12.40 5.84 -355.55 -2.08 -14.48 15 3 C 0.19 5.31 7.28 40.46 0.29 5.60 15 4 C -0.31 -9.19 10.42 23.86 0.25 -8.94 15 5 C 0.55 23.95 7.27 86.48 0.63 24.57 15 6 O -0.51 -25.77 16.23 -3.87 -0.06 -25.83 15 7 N -0.58 -27.13 2.52 -744.66 -1.87 -29.01 15 8 C 0.27 14.65 2.80 44.24 0.12 14.77 15 9 H 0.03 1.98 7.65 -2.39 -0.02 1.96 15 10 C -0.14 -7.21 8.98 71.98 0.65 -6.57 15 11 C -0.54 -31.77 8.15 25.60 0.21 -31.56 15 12 H 0.05 2.87 7.70 -2.91 -0.02 2.85 15 13 C 0.02 1.20 5.30 84.65 0.45 1.65 15 14 N -0.91 -53.04 11.32 21.45 0.24 -52.79 15 15 Si 0.97 45.42 29.54 68.60 2.03 47.44 15 16 H -0.27 -12.83 7.11 99.48 0.71 -12.13 15 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 19 C 0.54 22.01 8.10 87.12 0.71 22.72 15 20 O -0.50 -22.39 17.50 -3.20 -0.06 -22.44 15 21 H 0.07 0.62 8.14 -2.39 -0.02 0.60 15 22 H 0.11 0.37 8.14 -2.39 -0.02 0.36 15 23 H 0.07 0.64 8.14 -2.39 -0.02 0.62 15 24 H 0.42 6.73 8.95 -92.71 -0.83 5.90 15 25 H 0.20 4.33 7.87 -2.91 -0.02 4.31 15 26 H 0.08 4.58 6.07 -2.39 -0.01 4.57 15 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 28 H 0.04 2.02 6.89 -2.39 -0.02 2.00 15 29 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -72.79 259.14 3.21 -69.58 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 0.35 Total: 3.20 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 4.66 Total: 24.33 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -3.71 Total: -96.28 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.12 Total: -48.28 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.79 3.21 -69.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729089.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.693 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds