Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47747 * 2 1 4 4 H 1.07994 * 120.00294 * 240.11629 * 3 2 1 5 5 C 1.37882 * 119.99768 * 60.11227 * 3 2 1 6 6 N 1.31513 * 120.00001 * 0.02562 * 5 3 2 7 7 Si 1.86796 * 119.99997 * 180.02562 * 5 3 2 8 8 H 1.48503 * 109.47287 * 59.99965 * 7 5 3 9 9 H 1.48495 * 109.47463 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47360 * 300.00289 * 7 5 3 11 11 C 1.53008 * 109.46967 * 120.00147 * 2 1 3 12 12 O 1.42898 * 109.47042 * 179.97438 * 11 2 1 13 13 C 1.50703 * 109.46874 * 239.99745 * 2 1 3 14 14 C 1.38222 * 120.01401 * 245.47981 * 13 2 1 15 15 C 1.38224 * 120.02622 * 179.97438 * 14 13 2 16 16 C 1.38267 * 120.04791 * 0.02730 * 15 14 13 17 17 C 1.38175 * 120.03052 * 359.94843 * 16 15 14 18 18 C 1.38431 * 120.01276 * 65.71612 * 13 2 1 19 19 F 1.35112 * 120.02881 * 0.04066 * 18 13 2 20 20 H 1.08994 * 109.47608 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47140 * 300.00170 * 1 2 3 22 22 H 1.09004 * 109.47263 * 59.99565 * 1 2 3 23 23 H 0.97001 * 120.00164 * 179.97438 * 6 5 3 24 24 H 1.08997 * 109.46826 * 299.99560 * 11 2 1 25 25 H 1.09003 * 109.47096 * 59.99622 * 11 2 1 26 26 H 0.96699 * 113.99923 * 180.02562 * 12 11 2 27 27 H 1.07997 * 119.98752 * 359.95565 * 14 13 2 28 28 H 1.07991 * 119.97334 * 180.02562 * 15 14 13 29 29 H 1.08007 * 119.98554 * 179.97438 * 16 15 14 30 30 H 1.07991 * 120.01700 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 1 2.6518 1.7745 -0.8109 5 6 1.7013 2.2690 1.0353 6 7 0.9474 1.8382 2.0230 7 14 2.3235 4.0303 1.0350 8 1 1.8258 4.7310 -0.1760 9 1 1.8315 4.7294 2.2492 10 1 3.8085 4.0308 1.0318 11 6 2.0399 -0.7213 1.2493 12 8 3.4689 -0.7219 1.2490 13 6 2.0322 -0.7105 -1.2305 14 6 2.7310 -1.8967 -1.1071 15 6 3.1913 -2.5488 -2.2356 16 6 2.9539 -2.0152 -3.4888 17 6 2.2552 -0.8298 -3.6147 18 6 1.7982 -0.1729 -2.4845 19 9 1.1202 0.9895 -2.6060 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7147 2.4348 2.7515 24 1 1.6766 -0.2074 2.1392 25 1 1.6765 -1.7490 1.2493 26 1 3.8622 -1.1640 2.0138 27 1 2.9176 -2.3140 -0.1287 28 1 3.7368 -3.4757 -2.1382 29 1 3.3145 -2.5254 -4.3699 30 1 2.0696 -0.4134 -4.5937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260752611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -87.315608 kcal Electronic energy + Delta-G solvation = -15937.492512 eV Core-core repulsion = 13225.581007 eV Total energy + Delta-G solvation = -2711.911506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.52147 -40.20286 -37.86970 -35.65732 -33.39346 -31.27850 -30.06981 -27.26138 -26.55604 -23.96572 -23.01602 -20.84011 -18.60404 -18.05921 -17.76334 -16.99632 -16.80668 -16.19805 -16.05245 -15.37247 -14.92633 -14.64588 -14.05335 -13.54171 -13.50010 -13.22583 -12.95920 -12.77572 -12.68028 -12.63795 -12.24510 -12.14398 -11.91848 -11.25278 -10.75997 -10.63846 -10.24354 -9.60495 -9.25287 -8.01538 -6.11744 0.47387 0.58240 1.39043 1.39731 1.47197 2.44884 2.93997 3.22436 3.68799 3.87165 4.11067 4.14678 4.33341 4.57254 4.63015 4.71210 4.88867 4.95784 5.13626 5.24336 5.37319 5.38598 5.40743 5.58698 5.67333 5.73130 5.93800 6.06310 6.26078 6.40975 6.81478 7.30063 7.51511 8.97479 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.011811 C = 0.010225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.455494 B = 2370.025165 C = 2737.727757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.093 3.907 3 C -0.486 4.486 4 H 0.029 0.971 5 C 0.025 3.975 6 N -0.908 5.908 7 Si 0.940 3.060 8 H -0.281 1.281 9 H -0.278 1.278 10 H -0.280 1.280 11 C 0.096 3.904 12 O -0.573 6.573 13 C -0.096 4.096 14 C -0.102 4.102 15 C -0.133 4.133 16 C -0.106 4.106 17 C -0.169 4.169 18 C 0.064 3.936 19 F -0.153 7.153 20 H 0.030 0.970 21 H 0.069 0.931 22 H 0.027 0.973 23 H 0.260 0.740 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.372 0.628 27 H 0.135 0.865 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 -8.969 -5.640 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.093 3.907 3 C -0.524 4.524 4 H 0.047 0.953 5 C -0.173 4.173 6 N -0.548 5.548 7 Si 0.768 3.232 8 H -0.207 1.207 9 H -0.203 1.203 10 H -0.206 1.206 11 C 0.018 3.982 12 O -0.378 6.378 13 C -0.096 4.096 14 C -0.119 4.119 15 C -0.151 4.151 16 C -0.124 4.124 17 C -0.187 4.187 18 C 0.045 3.955 19 F -0.132 7.132 20 H 0.049 0.951 21 H 0.088 0.912 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.218 0.782 27 H 0.153 0.847 28 H 0.174 0.826 29 H 0.182 0.818 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.761 -8.514 -6.037 10.796 hybrid contribution 0.050 1.321 0.771 1.531 sum 2.811 -7.192 -5.266 9.346 Atomic orbital electron populations 1.21633 0.96495 0.98177 1.01710 1.17250 0.92270 0.93149 0.88034 1.20919 1.29902 0.95688 1.05871 0.95272 1.25368 0.95471 1.01158 0.95340 1.69832 1.37978 1.36218 1.10807 0.85889 0.78518 0.81599 0.77237 1.20670 1.20335 1.20574 1.22115 0.79881 0.95469 1.00712 1.86588 1.20816 1.81883 1.48528 1.20571 0.98677 0.95969 0.94425 1.21312 0.96546 0.93776 1.00306 1.21531 1.00527 1.01134 0.91862 1.21262 0.97767 0.94501 0.98853 1.21362 1.02191 0.98031 0.97165 1.18073 0.98301 0.83903 0.95176 1.91418 1.77959 1.47029 1.96763 0.95087 0.91180 0.95400 0.93068 0.92614 0.95766 0.78196 0.84727 0.82638 0.81821 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.09 71.98 0.58 -5.46 16 2 C 0.09 4.67 0.33 -53.67 -0.02 4.65 16 3 C -0.49 -27.59 6.51 25.60 0.17 -27.42 16 4 H 0.03 1.76 7.18 -2.91 -0.02 1.74 16 5 C 0.02 1.37 5.15 84.66 0.44 1.81 16 6 N -0.91 -50.53 9.35 21.45 0.20 -50.33 16 7 Si 0.94 45.64 29.54 68.60 2.03 47.66 16 8 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 11 C 0.10 4.39 4.92 71.98 0.35 4.75 16 12 O -0.57 -24.64 11.27 -148.98 -1.68 -26.32 16 13 C -0.10 -4.29 4.61 -19.82 -0.09 -4.38 16 14 C -0.10 -3.77 8.46 22.26 0.19 -3.58 16 15 C -0.13 -3.82 10.04 22.27 0.22 -3.60 16 16 C -0.11 -2.89 10.04 22.26 0.22 -2.67 16 17 C -0.17 -5.67 10.03 22.31 0.22 -5.45 16 18 C 0.06 2.81 6.61 22.37 0.15 2.96 16 19 F -0.15 -7.44 14.34 44.97 0.64 -6.79 16 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 3.72 6.08 -2.38 -0.01 3.70 16 22 H 0.03 1.38 6.77 -2.38 -0.02 1.37 16 23 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 24 H 0.06 2.84 6.06 -2.39 -0.01 2.83 16 25 H 0.02 0.98 7.26 -2.39 -0.02 0.97 16 26 H 0.37 11.82 9.12 -74.06 -0.68 11.14 16 27 H 0.14 4.76 5.33 -2.91 -0.02 4.75 16 28 H 0.16 3.22 8.06 -2.92 -0.02 3.20 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.14 4.06 8.06 -2.92 -0.02 4.03 16 Total: -1.00 -65.16 249.03 4.12 -61.05 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.49 Total: 13.12 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 2.44 Total: -38.39 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.20 Total: -50.33 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.68 Total: -26.32 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.64 Total: -6.79 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -65.16 4.12 -61.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260752611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.268 kcal (2) G-P(sol) polarization free energy of solvation -65.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds