Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39906 * 109.47031 * 2 1 4 4 C 1.50699 * 109.47302 * 240.00600 * 2 1 3 5 5 H 1.08005 * 119.99861 * 269.25048 * 4 2 1 6 6 C 1.37876 * 120.00239 * 89.24880 * 4 2 1 7 7 N 1.31523 * 119.99631 * 174.06007 * 6 4 2 8 8 Si 1.86793 * 120.00049 * 354.06775 * 6 4 2 9 9 H 1.48495 * 109.47676 * 85.95964 * 8 6 4 10 10 H 1.48503 * 109.46971 * 205.95784 * 8 6 4 11 11 H 1.48504 * 109.47056 * 325.95527 * 8 6 4 12 12 C 1.53000 * 109.47019 * 120.00091 * 2 1 3 13 13 O 1.42895 * 109.47106 * 299.99867 * 12 2 1 14 14 C 1.35902 * 116.99752 * 179.97438 * 13 12 2 15 15 C 1.38729 * 120.05548 * 359.73370 * 14 13 12 16 16 C 1.38144 * 119.94179 * 179.74296 * 15 14 13 17 17 C 1.38270 * 120.05630 * 0.50322 * 16 15 14 18 18 C 1.38264 * 120.10955 * 359.76887 * 17 16 15 19 19 C 1.38141 * 120.05862 * 359.97438 * 18 17 16 20 20 H 1.08999 * 109.46883 * 305.91502 * 1 2 3 21 21 H 1.09001 * 109.46674 * 65.91709 * 1 2 3 22 22 H 1.09004 * 109.46949 * 185.91521 * 1 2 3 23 23 H 0.97001 * 119.99635 * 180.02562 * 7 6 4 24 24 H 1.09006 * 109.46510 * 180.02562 * 12 2 1 25 25 H 1.08999 * 109.46937 * 60.00432 * 12 2 1 26 26 H 1.07993 * 120.03109 * 359.97438 * 15 14 13 27 27 H 1.08001 * 119.97250 * 180.27262 * 16 15 14 28 28 H 1.08005 * 119.94374 * 179.74742 * 17 16 15 29 29 H 1.08001 * 119.96981 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.03231 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3191 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.2239 -1.7728 -1.2004 6 6 2.2475 -0.0038 -2.3948 7 7 2.7952 -0.5977 -3.4326 8 14 1.7611 1.7967 -2.4982 9 1 2.8665 2.6390 -1.9749 10 1 1.4922 2.1564 -3.9137 11 1 0.5377 2.0263 -1.6882 12 6 2.0400 -0.7213 1.2492 13 8 1.5637 -0.0477 2.4160 14 6 1.9284 -0.5644 3.6188 15 6 2.7237 -1.6998 3.6749 16 6 3.0974 -2.2200 4.8989 17 6 2.6710 -1.6162 6.0674 18 6 1.8737 -0.4879 6.0141 19 6 1.5015 0.0394 4.7927 20 1 -0.3633 0.6028 0.8323 21 1 -0.3633 0.4194 -0.9382 22 1 -0.3633 -1.0222 0.1059 23 1 2.9469 -0.1005 -4.2517 24 1 3.1301 -0.7208 1.2494 25 1 1.6767 -1.7489 1.2491 26 1 3.0534 -2.1743 2.7626 27 1 3.7202 -3.1013 4.9431 28 1 2.9609 -2.0269 7.0233 29 1 1.5415 -0.0183 6.9282 30 1 0.8784 0.9205 4.7516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797608.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = -68.455538 kcal Electronic energy + Delta-G solvation = -15167.581366 eV Core-core repulsion = 12456.487695 eV Total energy + Delta-G solvation = -2711.093672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.78736 -39.74903 -37.13779 -33.57097 -31.62676 -30.83495 -29.49870 -26.34278 -25.34809 -22.52076 -21.90331 -19.78048 -18.13779 -16.96621 -15.77593 -15.76185 -15.49587 -15.22729 -14.31779 -14.01753 -13.90555 -13.28183 -13.07986 -12.65360 -12.30664 -12.29182 -11.91655 -11.47636 -11.33515 -10.80076 -10.67236 -10.60175 -10.44509 -10.10876 -9.40898 -9.05705 -8.89483 -8.66879 -7.96871 -6.30940 -4.44523 1.45251 1.60622 3.39067 3.46460 3.58113 3.62311 3.93032 4.37228 4.95305 4.98163 5.03855 5.22905 5.46345 5.52341 5.61760 5.64393 5.77519 5.79901 6.10177 6.13914 6.34246 6.46371 6.52760 6.55413 6.62036 6.90802 6.96890 7.08251 7.27549 7.78217 8.17579 8.60634 9.26735 10.78313 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.054415 B = 0.007013 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.438752 B = 3991.859389 C = 4249.059136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.220 3.780 3 F -0.214 7.214 4 C -0.563 4.563 5 H 0.090 0.910 6 C 0.082 3.918 7 N -0.879 5.879 8 Si 0.935 3.065 9 H -0.285 1.285 10 H -0.319 1.319 11 H -0.272 1.272 12 C 0.050 3.950 13 O -0.311 6.311 14 C 0.141 3.859 15 C -0.212 4.212 16 C -0.080 4.080 17 C -0.172 4.172 18 C -0.084 4.084 19 C -0.161 4.161 20 H 0.043 0.957 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.270 0.730 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 -1.061 14.782 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.201 3.799 3 F -0.195 7.195 4 C -0.600 4.600 5 H 0.108 0.892 6 C -0.125 4.125 7 N -0.513 5.513 8 Si 0.769 3.231 9 H -0.212 1.212 10 H -0.250 1.250 11 H -0.198 1.198 12 C -0.025 4.025 13 O -0.224 6.224 14 C 0.095 3.905 15 C -0.231 4.231 16 C -0.099 4.099 17 C -0.190 4.190 18 C -0.102 4.102 19 C -0.180 4.180 20 H 0.062 0.938 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.142 0.858 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.837 -0.868 14.524 14.665 hybrid contribution 0.057 0.659 -0.244 0.705 sum -1.779 -0.209 14.280 14.392 Atomic orbital electron populations 1.22478 0.96495 1.01676 1.01317 1.19077 0.92342 0.75441 0.93050 1.92193 1.90764 1.40751 1.95818 1.20931 1.48794 0.97384 0.92843 0.89182 1.25003 0.92628 0.99800 0.95046 1.69911 1.39844 1.37916 1.03656 0.86176 0.79935 0.83551 0.73479 1.21164 1.24958 1.19766 1.23789 0.99611 0.96833 0.82251 1.86152 1.70421 1.53681 1.12153 1.19210 0.93004 0.91934 0.86372 1.21403 1.03649 0.98609 0.99434 1.20932 0.98082 0.98928 0.91918 1.20968 1.01967 0.98051 0.98048 1.20897 0.96910 0.95686 0.96718 1.20463 1.04908 1.02516 0.90071 0.93768 0.91982 0.91983 0.91995 0.91314 0.91105 0.85150 0.86104 0.86386 0.85834 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.33 37.16 0.31 -3.17 16 2 C 0.22 5.23 0.96 -91.77 -0.09 5.14 16 3 F -0.21 -5.48 12.24 2.25 0.03 -5.46 16 4 C -0.56 -15.34 8.79 -34.44 -0.30 -15.64 16 5 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 6 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 7 N -0.88 -26.16 13.96 55.43 0.77 -25.38 16 8 Si 0.94 23.98 24.59 -169.99 -4.18 19.80 16 9 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 10 H -0.32 -8.07 7.11 56.52 0.40 -7.67 16 11 H -0.27 -6.73 5.66 56.52 0.32 -6.41 16 12 C 0.05 1.02 3.91 37.16 0.15 1.17 16 13 O -0.31 -6.09 9.52 -19.43 -0.18 -6.27 16 14 C 0.14 2.39 6.69 -39.22 -0.26 2.13 16 15 C -0.21 -3.24 9.04 -39.43 -0.36 -3.60 16 16 C -0.08 -1.03 10.04 -39.60 -0.40 -1.43 16 17 C -0.17 -2.03 10.04 -39.56 -0.40 -2.42 16 18 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 19 C -0.16 -2.35 9.99 -39.43 -0.39 -2.74 16 20 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 21 H 0.06 1.38 6.26 -51.93 -0.32 1.05 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.07 1.40 7.68 -51.93 -0.40 1.00 16 25 H 0.07 1.32 7.65 -51.93 -0.40 0.93 16 26 H 0.13 1.95 6.30 -52.49 -0.33 1.62 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 255.97 15.07 3.86 3.86 Total: -1.00 -30.06 255.97 -5.56 -35.62 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -3.61 Total: -2.42 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.24 Total: -19.75 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.77 Total: -25.38 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.18 Total: -6.27 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.03 Total: -5.46 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -4.18 Total: 19.80 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.06 -5.56 -35.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797608.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.832 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds