Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35512 * 117.00183 * 2 1 4 4 C 1.39423 * 120.47983 * 180.25263 * 3 2 1 5 5 C 1.38183 * 118.47075 * 180.28018 * 4 3 2 6 6 C 1.50703 * 120.37578 * 179.74145 * 5 4 3 7 7 C 1.50701 * 109.47151 * 124.72989 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27762 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48494 * 109.47230 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47301 * 119.99669 * 11 9 7 14 14 H 1.48498 * 109.47430 * 239.99516 * 11 9 7 15 15 N 1.32482 * 119.24673 * 359.47183 * 5 4 3 16 16 C 1.32291 * 120.90678 * 0.26836 * 15 5 4 17 17 O 1.35454 * 119.16776 * 179.97438 * 16 15 5 18 18 C 1.42902 * 117.00329 * 180.02562 * 17 16 15 19 19 N 1.32308 * 121.66793 * 0.02562 * 16 15 5 20 20 H 1.09003 * 109.46860 * 60.00225 * 1 2 3 21 21 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47097 * 300.00018 * 1 2 3 23 23 H 1.08004 * 120.76451 * 0.02869 * 4 3 2 24 24 H 1.09000 * 109.47088 * 4.72128 * 6 5 4 25 25 H 1.09007 * 109.46560 * 244.72633 * 6 5 4 26 26 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.46631 * 299.99910 * 18 17 16 28 28 H 1.08998 * 109.46619 * 60.00118 * 18 17 16 29 29 H 1.09000 * 109.46836 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4359 1.2920 -0.0053 5 6 4.0198 2.5444 0.0009 6 6 5.5202 2.6858 0.0014 7 6 5.9442 3.5446 -1.1621 8 1 5.2015 3.9473 -1.8349 9 6 7.2807 3.8109 -1.3713 10 7 8.1851 3.3201 -0.5522 11 14 7.8069 4.8689 -2.8180 12 1 6.6070 5.2944 -3.5824 13 1 8.5269 6.0679 -2.3185 14 1 8.7053 4.0854 -3.7035 15 7 3.2456 3.6195 0.0009 16 6 1.9274 3.5076 0.0004 17 8 1.1696 4.6303 0.0010 18 6 -0.2487 4.4557 0.0010 19 7 1.3305 2.3268 0.0004 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0436 0.3992 -0.0099 24 1 5.9779 1.7006 -0.0882 25 1 5.8408 3.1521 0.9330 26 1 9.1253 3.5072 -0.6996 27 1 -0.5466 3.9018 -0.8892 28 1 -0.5464 3.9010 0.8908 29 1 -0.7348 5.4313 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260859119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = -24.395008 kcal Electronic energy + Delta-G solvation = -14990.473440 eV Core-core repulsion = 12301.210338 eV Total energy + Delta-G solvation = -2689.263102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.88258 -38.75169 -37.57659 -33.83765 -32.33626 -31.12927 -28.61149 -27.41041 -26.78234 -23.89061 -23.25406 -21.27791 -18.46180 -17.86888 -16.62670 -16.34436 -15.88197 -15.48073 -14.89396 -14.81641 -14.46827 -13.88864 -13.45028 -12.66766 -12.25652 -11.99281 -11.79240 -11.66115 -11.58442 -10.90163 -10.68883 -10.55101 -10.48258 -9.97418 -9.67693 -9.19174 -8.66701 -8.42094 -8.24441 -6.05224 -4.06207 1.60299 1.71336 2.92063 3.13851 3.33712 3.40945 3.47784 4.30239 4.35670 4.49708 5.18495 5.21214 5.24996 5.26404 5.31826 5.33756 5.46627 5.55163 5.66846 5.90304 5.94402 6.79287 6.95163 7.20144 7.38494 7.50106 7.66764 7.92573 8.22745 8.74655 8.96788 9.56539 11.06166 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.032302 B = 0.007379 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.624560 B = 3793.474740 C = 4364.035462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.303 6.303 3 C 0.383 3.617 4 C -0.288 4.288 5 C 0.276 3.724 6 C 0.059 3.941 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.900 3.100 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.525 5.525 16 C 0.523 3.477 17 O -0.289 6.289 18 C 0.048 3.952 19 N -0.643 5.643 20 H 0.057 0.943 21 H 0.095 0.905 22 H 0.057 0.943 23 H 0.151 0.849 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 -4.082 1.535 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.208 6.208 3 C 0.199 3.801 4 C -0.311 4.311 5 C 0.135 3.865 6 C 0.022 3.978 7 C -0.541 4.541 8 H 0.081 0.919 9 C -0.143 4.143 10 N -0.535 5.535 11 Si 0.728 3.272 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.210 1.210 15 N -0.254 5.254 16 C 0.220 3.780 17 O -0.191 6.191 18 C -0.048 4.048 19 N -0.391 5.391 20 H 0.076 0.924 21 H 0.113 0.887 22 H 0.075 0.925 23 H 0.169 0.831 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.374 -3.283 1.566 15.798 hybrid contribution 0.200 -0.245 -0.766 0.829 sum -15.174 -3.528 0.800 15.599 Atomic orbital electron populations 1.22829 0.77668 1.02717 1.02286 1.86253 1.22613 1.24451 1.87458 1.19704 0.89201 0.83396 0.87830 1.21782 0.91633 1.01324 1.16368 1.22475 0.98939 0.84634 0.80486 1.18491 0.80245 0.99491 0.99566 1.20962 0.92117 1.30632 1.10368 0.91927 1.24961 0.96481 0.96088 0.96792 1.69946 1.01187 1.45193 1.37206 0.86396 0.78556 0.80092 0.82187 1.19659 1.20868 1.21034 1.67713 1.01113 1.34897 1.21725 1.20459 0.86732 0.82684 0.88123 1.86113 1.19498 1.25970 1.87507 1.22852 0.76921 1.02812 1.02209 1.67393 1.42321 0.98926 1.30425 0.92448 0.88710 0.92466 0.83149 0.93420 0.92842 0.92803 0.92436 0.92468 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.41 101.05 1.05 1.50 15 2 O -0.30 -4.67 10.49 -18.23 -0.19 -4.87 15 3 C 0.38 6.99 7.53 -16.71 -0.13 6.86 15 4 C -0.29 -5.67 9.75 -39.16 -0.38 -6.05 15 5 C 0.28 6.32 6.14 -82.33 -0.51 5.81 15 6 C 0.06 1.51 5.40 -29.03 -0.16 1.36 15 7 C -0.50 -14.19 8.93 -34.44 -0.31 -14.50 15 8 H 0.06 1.81 7.70 -52.49 -0.40 1.41 15 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 10 N -0.90 -26.10 13.29 55.43 0.74 -25.37 15 11 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 15 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 15 15 N -0.52 -12.31 10.13 -11.02 -0.11 -12.42 15 16 C 0.52 10.69 8.49 -91.28 -0.77 9.92 15 17 O -0.29 -5.24 10.55 -18.05 -0.19 -5.44 15 18 C 0.05 0.59 10.36 101.05 1.05 1.64 15 19 N -0.64 -11.76 8.17 -14.79 -0.12 -11.88 15 20 H 0.06 0.63 8.12 -51.93 -0.42 0.21 15 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.61 8.12 -51.93 -0.42 0.19 15 23 H 0.15 2.66 8.00 -52.48 -0.42 2.24 15 24 H 0.05 1.20 7.93 -51.93 -0.41 0.79 15 25 H 0.05 1.44 8.14 -51.93 -0.42 1.01 15 26 H 0.26 7.20 8.31 -40.82 -0.34 6.87 15 27 H 0.06 0.67 8.09 -51.93 -0.42 0.25 15 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 15 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 LS Contribution 264.73 15.07 3.99 3.99 Total: -1.00 -31.53 264.73 -4.48 -36.01 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -3.32 Total: -4.93 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.25 Total: 8.07 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.50 Total: -49.67 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.38 Total: -10.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.53 -4.48 -36.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.614 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds