Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35512 * 117.00183 * 2 1 4 4 C 1.39423 * 120.47983 * 180.25263 * 3 2 1 5 5 C 1.38183 * 118.47075 * 180.28018 * 4 3 2 6 6 C 1.50703 * 120.37578 * 179.74145 * 5 4 3 7 7 C 1.50701 * 109.47151 * 124.72989 * 6 5 4 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27762 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48494 * 109.47230 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47301 * 119.99669 * 11 9 7 14 14 H 1.48498 * 109.47430 * 239.99516 * 11 9 7 15 15 N 1.32482 * 119.24673 * 359.47183 * 5 4 3 16 16 C 1.32291 * 120.90678 * 0.26836 * 15 5 4 17 17 O 1.35454 * 119.16776 * 179.97438 * 16 15 5 18 18 C 1.42902 * 117.00329 * 180.02562 * 17 16 15 19 19 N 1.32308 * 121.66793 * 0.02562 * 16 15 5 20 20 H 1.09003 * 109.46860 * 60.00225 * 1 2 3 21 21 H 1.08999 * 109.47479 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47097 * 300.00018 * 1 2 3 23 23 H 1.08004 * 120.76451 * 0.02869 * 4 3 2 24 24 H 1.09000 * 109.47088 * 4.72128 * 6 5 4 25 25 H 1.09007 * 109.46560 * 244.72633 * 6 5 4 26 26 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.46631 * 299.99910 * 18 17 16 28 28 H 1.08998 * 109.46619 * 60.00118 * 18 17 16 29 29 H 1.09000 * 109.46836 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4359 1.2920 -0.0053 5 6 4.0198 2.5444 0.0009 6 6 5.5202 2.6858 0.0014 7 6 5.9442 3.5446 -1.1621 8 1 5.2015 3.9473 -1.8349 9 6 7.2807 3.8109 -1.3713 10 7 8.1851 3.3201 -0.5522 11 14 7.8069 4.8689 -2.8180 12 1 6.6070 5.2944 -3.5824 13 1 8.5269 6.0679 -2.3185 14 1 8.7053 4.0854 -3.7035 15 7 3.2456 3.6195 0.0009 16 6 1.9274 3.5076 0.0004 17 8 1.1696 4.6303 0.0010 18 6 -0.2487 4.4557 0.0010 19 7 1.3305 2.3268 0.0004 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0436 0.3992 -0.0099 24 1 5.9779 1.7006 -0.0882 25 1 5.8408 3.1521 0.9330 26 1 9.1253 3.5072 -0.6996 27 1 -0.5466 3.9018 -0.8892 28 1 -0.5464 3.9010 0.8908 29 1 -0.7348 5.4313 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = -49.663573 kcal Electronic energy + Delta-G solvation = -14991.569167 eV Core-core repulsion = 12301.210338 eV Total energy + Delta-G solvation = -2690.358829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.37712 -40.04226 -38.98373 -35.68690 -34.16420 -32.71242 -30.32498 -28.63596 -27.92334 -25.76855 -24.75582 -22.91926 -19.88039 -19.32725 -18.51885 -17.70772 -17.51930 -16.65520 -16.56684 -16.34633 -15.96775 -15.09701 -14.90753 -14.47818 -14.10249 -13.58324 -13.05686 -12.83311 -12.78351 -12.71543 -12.60118 -12.05440 -12.00897 -11.88837 -11.48282 -10.98609 -10.57618 -10.26259 -9.75827 -8.20849 -6.29199 0.02608 0.15721 1.42017 1.43428 1.55169 1.57061 1.88699 2.42744 2.75845 2.95201 3.13820 3.75611 3.97968 4.30225 4.36470 4.37578 4.39492 4.40607 4.47550 4.68058 4.71854 5.12329 5.29818 5.32914 5.66435 5.72069 5.85946 6.14243 6.24805 6.77672 7.17071 7.37277 8.90917 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.032302 B = 0.007379 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.624560 B = 3793.474740 C = 4364.035462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.393 3.607 4 C -0.289 4.289 5 C 0.257 3.743 6 C 0.067 3.933 7 C -0.520 4.520 8 H 0.049 0.951 9 C 0.010 3.990 10 N -0.925 5.925 11 Si 0.965 3.035 12 H -0.273 1.273 13 H -0.276 1.276 14 H -0.272 1.272 15 N -0.568 5.568 16 C 0.520 3.480 17 O -0.306 6.306 18 C 0.040 3.960 19 N -0.623 5.623 20 H 0.060 0.940 21 H 0.133 0.867 22 H 0.062 0.938 23 H 0.166 0.834 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.267 0.733 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 -4.547 0.890 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.206 6.206 3 C 0.207 3.793 4 C -0.312 4.312 5 C 0.116 3.884 6 C 0.029 3.971 7 C -0.559 4.559 8 H 0.067 0.933 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.790 3.210 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.197 1.197 15 N -0.299 5.299 16 C 0.216 3.784 17 O -0.208 6.208 18 C -0.054 4.054 19 N -0.371 5.371 20 H 0.079 0.921 21 H 0.151 0.849 22 H 0.081 0.919 23 H 0.184 0.816 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.191 -3.762 0.927 17.622 hybrid contribution 0.553 -0.157 -0.527 0.780 sum -16.638 -3.920 0.400 17.098 Atomic orbital electron populations 1.23242 0.74932 1.05440 1.02689 1.86277 1.25199 1.22460 1.86624 1.19746 0.88955 0.84328 0.86267 1.21786 0.92893 1.00542 1.15998 1.21972 0.97665 0.86044 0.82757 1.18202 0.82794 0.98417 0.97639 1.21166 0.92283 1.31274 1.11147 0.93279 1.25769 0.96423 0.97216 0.99410 1.70036 1.01612 1.46162 1.38677 0.85400 0.78087 0.78555 0.78993 1.19760 1.20170 1.19732 1.67502 1.03051 1.35844 1.23480 1.20530 0.86249 0.83857 0.87719 1.86114 1.22153 1.25399 1.87085 1.23270 0.73907 1.05328 1.02910 1.67523 1.41458 0.98325 1.29824 0.92147 0.84930 0.91909 0.81593 0.93830 0.95367 0.92369 0.91822 0.91550 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.41 113.37 1.18 1.76 15 2 O -0.30 -8.48 10.49 -88.15 -0.92 -9.40 15 3 C 0.39 13.71 7.53 84.84 0.64 14.35 15 4 C -0.29 -11.31 9.75 22.54 0.22 -11.09 15 5 C 0.26 12.03 6.14 42.45 0.26 12.29 15 6 C 0.07 3.55 5.40 29.10 0.16 3.71 15 7 C -0.52 -30.24 8.93 25.60 0.23 -30.01 15 8 H 0.05 2.92 7.70 -2.91 -0.02 2.90 15 9 C 0.01 0.59 5.46 84.65 0.46 1.06 15 10 N -0.92 -54.70 13.29 21.45 0.28 -54.41 15 11 Si 0.96 45.11 29.54 68.60 2.03 47.14 15 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 15 N -0.57 -27.18 10.13 -301.74 -3.06 -30.23 15 16 C 0.52 21.01 8.49 180.58 1.53 22.55 15 17 O -0.31 -10.78 10.55 -87.51 -0.92 -11.71 15 18 C 0.04 0.89 10.36 113.37 1.17 2.06 15 19 N -0.62 -21.80 8.17 -426.36 -3.48 -25.28 15 20 H 0.06 1.12 8.12 -2.39 -0.02 1.10 15 21 H 0.13 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.06 1.13 8.12 -2.39 -0.02 1.11 15 23 H 0.17 5.79 8.00 -2.91 -0.02 5.77 15 24 H 0.04 2.29 7.93 -2.39 -0.02 2.27 15 25 H 0.03 1.61 8.14 -2.38 -0.02 1.59 15 26 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 27 H 0.06 1.33 8.09 -2.39 -0.02 1.31 15 28 H 0.07 1.34 8.09 -2.39 -0.02 1.32 15 29 H 0.13 1.98 8.14 -2.39 -0.02 1.96 15 Total: -1.00 -68.56 264.73 0.93 -67.63 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.15 Total: -0.40 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.85 Total: 16.67 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -6.25 Total: -109.93 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -1.85 Total: -21.11 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.56 0.93 -67.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.969 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds