Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48503 * 109.47146 * 270.00192 * 3 2 1 5 5 H 1.48501 * 109.47082 * 29.99709 * 3 2 1 6 6 H 1.48498 * 109.47444 * 149.99412 * 3 2 1 7 7 C 1.40169 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.40237 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.39803 * 126.65749 * 359.94446 * 9 7 2 11 11 C 1.38699 * 107.53696 * 180.02562 * 10 9 7 12 12 N 1.31244 * 109.07611 * 0.02562 * 11 10 9 13 13 N 1.37457 * 126.65991 * 180.02562 * 9 7 2 14 14 C 1.46501 * 126.20416 * 359.96824 * 13 9 7 15 15 H 1.08993 * 110.01346 * 358.61766 * 14 13 9 16 16 C 1.54261 * 110.03455 * 237.17114 * 14 13 9 17 17 C 1.54887 * 104.19788 * 217.10661 * 16 14 13 18 18 C 1.54888 * 102.74705 * 37.94309 * 17 16 14 19 19 H 1.09000 * 110.48480 * 203.37834 * 18 17 16 20 20 F 1.39899 * 110.48641 * 80.73616 * 18 17 16 21 21 C 1.53877 * 110.02919 * 120.00295 * 14 13 9 22 22 H 0.97001 * 119.99989 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.23790 * 0.07078 * 10 9 7 24 24 H 1.08000 * 125.46471 * 180.26659 * 11 10 9 25 25 H 1.09007 * 110.48723 * 335.78964 * 16 14 13 26 26 H 1.09000 * 110.48365 * 98.42467 * 16 14 13 27 27 H 1.09001 * 110.75728 * 279.63007 * 17 16 14 28 28 H 1.09003 * 110.91527 * 156.33205 * 17 16 14 29 29 H 1.08992 * 110.03490 * 238.57239 * 21 14 13 30 30 H 1.08999 * 110.03058 * 359.95741 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4402 0.7001 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2139 0.0010 9 6 1.3073 -2.4284 0.0005 10 6 -0.0813 -2.5904 0.0011 11 6 -0.3431 -3.9525 0.0015 12 7 0.7940 -4.6078 0.0017 13 7 1.8519 -3.6905 0.0015 14 6 3.2801 -4.0166 0.0021 15 1 3.8717 -3.1016 -0.0230 16 6 3.6207 -4.9011 -1.2150 17 6 4.6812 -5.8941 -0.6781 18 6 4.1751 -6.1928 0.7549 19 1 4.9964 -6.5314 1.3867 20 9 3.1535 -7.1481 0.7242 21 6 3.6326 -4.8379 1.2547 22 1 -0.4850 0.8401 -0.0004 23 1 -0.8164 -1.7992 0.0006 24 1 -1.3252 -4.4018 -0.0021 25 1 2.7351 -5.4367 -1.5572 26 1 4.0372 -4.2969 -2.0209 27 1 5.6668 -5.4293 -0.6507 28 1 4.7014 -6.8039 -1.2782 29 1 4.3959 -4.3219 1.8370 30 1 2.7412 -4.9931 1.8625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 5.178534 kcal Electronic energy + Delta-G solvation = -15463.691639 eV Core-core repulsion = 12788.083731 eV Total energy + Delta-G solvation = -2675.607908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.16944 -39.02592 -36.60147 -33.61096 -30.78470 -28.72009 -28.33866 -26.14852 -25.02529 -20.98178 -20.49613 -19.63643 -18.25605 -17.07912 -16.29987 -15.62360 -15.24497 -14.56785 -14.27194 -13.38392 -13.14080 -12.82338 -12.58314 -12.07020 -11.89462 -11.58632 -11.34718 -11.30303 -10.99137 -10.84569 -10.65614 -10.50711 -10.36884 -10.11522 -9.74410 -9.43462 -8.55931 -7.72622 -6.72317 -6.60729 -4.43396 2.93410 3.05806 3.08966 3.65253 3.85983 4.13032 4.56356 4.67079 4.75206 5.01909 5.08677 5.38970 5.56003 5.67846 5.68762 5.79609 5.84685 5.98754 6.21808 6.42628 6.53511 6.62861 6.67946 7.06880 7.39363 7.55842 7.90143 8.17200 8.53375 8.76416 8.89645 9.26920 9.73028 10.28063 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.008699 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.791956 B = 3217.913680 C = 3735.906173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.921 3.079 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.452 4.452 8 H 0.072 0.928 9 C 0.249 3.751 10 C -0.360 4.360 11 C 0.034 3.966 12 N -0.383 5.383 13 N -0.424 5.424 14 C 0.183 3.817 15 H 0.095 0.905 16 C -0.132 4.132 17 C -0.146 4.146 18 C 0.089 3.911 19 H 0.081 0.919 20 F -0.205 7.205 21 C -0.159 4.159 22 H 0.277 0.723 23 H 0.157 0.843 24 H 0.143 0.857 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -3.733 0.216 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.489 4.489 8 H 0.090 0.910 9 C 0.131 3.869 10 C -0.391 4.391 11 C -0.147 4.147 12 N -0.205 5.205 13 N -0.212 5.212 14 C 0.078 3.922 15 H 0.113 0.887 16 C -0.170 4.170 17 C -0.184 4.184 18 C 0.053 3.947 19 H 0.099 0.901 20 F -0.186 7.186 21 C -0.198 4.198 22 H 0.088 0.912 23 H 0.174 0.826 24 H 0.160 0.840 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.632 -4.819 0.224 9.889 hybrid contribution -0.105 1.587 0.016 1.591 sum 8.527 -3.232 0.240 9.122 Atomic orbital electron populations 1.69741 1.07357 1.28337 1.35932 1.25728 0.94864 1.00891 0.92736 0.86106 0.79982 0.80227 0.79088 1.19501 1.20122 1.18797 1.18574 0.93847 0.88820 1.47619 0.90978 1.18789 0.92267 0.83805 0.92084 1.22131 0.95139 0.94565 1.27278 1.23152 0.95692 0.94816 1.01036 1.76904 0.93634 1.15994 1.33969 1.48597 1.02978 1.03996 1.65645 1.21236 0.79913 0.97772 0.93301 0.88744 1.22748 0.99218 0.97280 0.97750 1.23054 0.99335 1.00441 0.95610 1.22235 0.87405 0.87261 0.97803 0.90109 1.92832 1.62417 1.65748 1.97556 1.23175 1.02709 0.94762 0.99115 0.91159 0.82605 0.83967 0.89729 0.91293 0.89973 0.90545 0.90246 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.44 10.30 55.56 0.57 -19.87 16 2 C 0.08 1.93 5.50 -17.28 -0.10 1.83 16 3 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.92 9.05 -38.11 -0.34 -12.27 16 8 H 0.07 1.77 6.77 -52.49 -0.36 1.41 16 9 C 0.25 6.87 6.75 -84.01 -0.57 6.31 16 10 C -0.36 -10.05 9.77 -38.83 -0.38 -10.43 16 11 C 0.03 0.89 11.93 -17.63 -0.21 0.67 16 12 N -0.38 -10.00 12.01 30.45 0.37 -9.63 16 13 N -0.42 -10.62 3.27 -51.07 -0.17 -10.79 16 14 C 0.18 3.64 3.72 -66.81 -0.25 3.39 16 15 H 0.09 1.82 6.76 -51.93 -0.35 1.47 16 16 C -0.13 -2.30 6.51 -25.08 -0.16 -2.46 16 17 C -0.15 -1.98 6.70 -24.74 -0.17 -2.15 16 18 C 0.09 1.35 4.66 -25.07 -0.12 1.23 16 19 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 20 F -0.20 -3.82 17.17 2.25 0.04 -3.78 16 21 C -0.16 -2.76 6.36 -25.61 -0.16 -2.92 16 22 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 23 H 0.16 4.47 5.73 -52.49 -0.30 4.17 16 24 H 0.14 3.19 8.06 -52.49 -0.42 2.76 16 25 H 0.08 1.73 7.70 -51.92 -0.40 1.33 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.85 7.83 -51.93 -0.41 1.44 16 LS Contribution 256.45 15.07 3.86 3.86 Total: -1.00 -30.28 256.45 -6.29 -36.57 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.48 Total: 6.94 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.45 Total: -16.80 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.77 Total: -40.29 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.28 -6.29 -36.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.745 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds