Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48503 * 109.47146 * 270.00192 * 3 2 1 5 5 H 1.48501 * 109.47082 * 29.99709 * 3 2 1 6 6 H 1.48498 * 109.47444 * 149.99412 * 3 2 1 7 7 C 1.40169 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00182 * 180.02562 * 7 2 1 9 9 C 1.40237 * 119.99845 * 0.02562 * 7 2 1 10 10 C 1.39803 * 126.65749 * 359.94446 * 9 7 2 11 11 C 1.38699 * 107.53696 * 180.02562 * 10 9 7 12 12 N 1.31244 * 109.07611 * 0.02562 * 11 10 9 13 13 N 1.37457 * 126.65991 * 180.02562 * 9 7 2 14 14 C 1.46501 * 126.20416 * 359.96824 * 13 9 7 15 15 H 1.08993 * 110.01346 * 358.61766 * 14 13 9 16 16 C 1.54261 * 110.03455 * 237.17114 * 14 13 9 17 17 C 1.54887 * 104.19788 * 217.10661 * 16 14 13 18 18 C 1.54888 * 102.74705 * 37.94309 * 17 16 14 19 19 H 1.09000 * 110.48480 * 203.37834 * 18 17 16 20 20 F 1.39899 * 110.48641 * 80.73616 * 18 17 16 21 21 C 1.53877 * 110.02919 * 120.00295 * 14 13 9 22 22 H 0.97001 * 119.99989 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.23790 * 0.07078 * 10 9 7 24 24 H 1.08000 * 125.46471 * 180.26659 * 11 10 9 25 25 H 1.09007 * 110.48723 * 335.78964 * 16 14 13 26 26 H 1.09000 * 110.48365 * 98.42467 * 16 14 13 27 27 H 1.09001 * 110.75728 * 279.63007 * 17 16 14 28 28 H 1.09003 * 110.91527 * 156.33205 * 17 16 14 29 29 H 1.08992 * 110.03490 * 238.57239 * 21 14 13 30 30 H 1.08999 * 110.03058 * 359.95741 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 2.4892 2.0464 -1.4001 5 1 1.4391 2.6527 0.7000 6 1 3.5392 1.4402 0.7001 7 6 2.0085 -1.2139 0.0005 8 1 3.0885 -1.2139 0.0010 9 6 1.3073 -2.4284 0.0005 10 6 -0.0813 -2.5904 0.0011 11 6 -0.3431 -3.9525 0.0015 12 7 0.7940 -4.6078 0.0017 13 7 1.8519 -3.6905 0.0015 14 6 3.2801 -4.0166 0.0021 15 1 3.8717 -3.1016 -0.0230 16 6 3.6207 -4.9011 -1.2150 17 6 4.6812 -5.8941 -0.6781 18 6 4.1751 -6.1928 0.7549 19 1 4.9964 -6.5314 1.3867 20 9 3.1535 -7.1481 0.7242 21 6 3.6326 -4.8379 1.2547 22 1 -0.4850 0.8401 -0.0004 23 1 -0.8164 -1.7992 0.0006 24 1 -1.3252 -4.4018 -0.0021 25 1 2.7351 -5.4367 -1.5572 26 1 4.0372 -4.2969 -2.0209 27 1 5.6668 -5.4293 -0.6507 28 1 4.7014 -6.8039 -1.2782 29 1 4.3959 -4.3219 1.8370 30 1 2.7412 -4.9931 1.8625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = -12.964020 kcal Electronic energy + Delta-G solvation = -15464.478359 eV Core-core repulsion = 12788.083731 eV Total energy + Delta-G solvation = -2676.394628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.49174 -40.92728 -38.06512 -35.55923 -32.52389 -30.62073 -29.69252 -27.75659 -27.03156 -22.64888 -21.78285 -21.55574 -20.05443 -18.89395 -17.67693 -17.39808 -16.67275 -15.94266 -15.84080 -15.00152 -14.82038 -14.61048 -14.03868 -13.85167 -13.65384 -13.40489 -12.95254 -12.85299 -12.39186 -12.38583 -12.11268 -11.98732 -11.72502 -11.55352 -11.50364 -11.28247 -10.58787 -9.70343 -8.75030 -8.50810 -6.47494 1.28079 1.41919 1.57108 1.79337 2.16189 2.39505 2.57234 3.29711 3.44833 3.48898 3.80270 3.90043 4.22322 4.27803 4.34675 4.44816 4.60137 4.69710 4.83550 4.94159 5.07943 5.12300 5.17321 5.35094 5.44893 5.58052 5.94456 6.09552 6.52055 6.74910 6.86600 7.29016 7.70288 8.40901 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.008699 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.791956 B = 3217.913680 C = 3735.906173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.477 4.477 8 H 0.086 0.914 9 C 0.224 3.776 10 C -0.396 4.396 11 C 0.025 3.975 12 N -0.394 5.394 13 N -0.425 5.425 14 C 0.162 3.838 15 H 0.101 0.899 16 C -0.130 4.130 17 C -0.130 4.130 18 C 0.083 3.917 19 H 0.128 0.872 20 F -0.230 7.230 21 C -0.155 4.155 22 H 0.286 0.714 23 H 0.142 0.858 24 H 0.169 0.831 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 -3.177 0.291 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.185 4.185 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.513 4.513 8 H 0.104 0.896 9 C 0.104 3.896 10 C -0.428 4.428 11 C -0.156 4.156 12 N -0.217 5.217 13 N -0.214 5.214 14 C 0.059 3.941 15 H 0.119 0.881 16 C -0.169 4.169 17 C -0.167 4.167 18 C 0.048 3.952 19 H 0.146 0.854 20 F -0.211 7.211 21 C -0.194 4.194 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.186 0.814 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.141 0.859 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.417 -4.306 0.299 12.205 hybrid contribution -1.000 1.419 -0.008 1.736 sum 10.417 -2.887 0.291 10.813 Atomic orbital electron populations 1.69834 1.09141 1.29947 1.35559 1.26847 0.95732 1.04582 0.91380 0.84900 0.78714 0.74736 0.79452 1.18696 1.19352 1.17597 1.18982 0.94678 0.89161 1.48477 0.89640 1.19212 0.92712 0.85289 0.92378 1.22200 0.95713 0.95154 1.29683 1.23525 0.96907 0.94300 1.00891 1.76799 0.94155 1.16892 1.33809 1.48915 1.04545 1.02989 1.64916 1.21783 0.77280 0.99093 0.95904 0.88119 1.22694 0.99239 0.97738 0.97221 1.23067 0.99558 0.99952 0.94162 1.22611 0.87570 0.85406 0.99653 0.85443 1.92787 1.63970 1.66632 1.97741 1.23158 1.02105 0.96451 0.97649 0.90304 0.84053 0.81419 0.93500 0.90050 0.85912 0.89300 0.86867 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.19 10.30 21.87 0.23 -42.97 16 2 C 0.03 1.54 5.50 85.32 0.47 2.01 16 3 Si 1.00 36.98 29.56 68.60 2.03 39.01 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 7 C -0.48 -25.31 9.05 23.23 0.21 -25.10 16 8 H 0.09 4.14 6.77 -2.91 -0.02 4.12 16 9 C 0.22 12.68 6.75 39.13 0.26 12.95 16 10 C -0.40 -23.06 9.77 22.76 0.22 -22.83 16 11 C 0.03 1.34 11.93 84.89 1.01 2.36 16 12 N -0.39 -21.22 12.01 -57.57 -0.69 -21.91 16 13 N -0.42 -21.75 3.27 -315.50 -1.03 -22.78 16 14 C 0.16 6.36 3.72 45.71 0.17 6.54 16 15 H 0.10 3.75 6.76 -2.39 -0.02 3.73 16 16 C -0.13 -4.40 6.51 31.67 0.21 -4.20 16 17 C -0.13 -3.05 6.70 31.88 0.21 -2.84 16 18 C 0.08 2.27 4.66 31.67 0.15 2.42 16 19 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 20 F -0.23 -8.36 17.17 44.97 0.77 -7.59 16 21 C -0.16 -5.16 6.36 31.32 0.20 -4.96 16 22 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 23 H 0.14 8.53 5.73 -2.91 -0.02 8.51 16 24 H 0.17 7.73 8.06 -2.91 -0.02 7.71 16 25 H 0.05 1.93 7.70 -2.38 -0.02 1.91 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.05 2.06 7.83 -2.39 -0.02 2.04 16 Total: -1.00 -68.63 256.45 5.56 -63.07 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.14 Total: 26.83 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.12 Total: -33.66 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.50 Total: -87.66 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 0.77 Total: -7.59 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -68.63 5.56 -63.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.104 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds