Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86798 * 120.00136 * 2 1 4 4 H 1.48504 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47070 * 299.99854 * 3 2 1 6 6 H 1.48501 * 109.47027 * 60.00129 * 3 2 1 7 7 C 1.39698 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.41600 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.41886 * 126.55523 * 0.15447 * 9 7 2 11 11 N 1.30315 * 108.04395 * 180.23088 * 10 9 7 12 12 N 1.39881 * 109.23479 * 359.77675 * 11 10 9 13 13 C 1.46491 * 125.67550 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.02262 * 26.42169 * 13 12 11 15 15 C 1.54272 * 110.03191 * 147.85916 * 13 12 11 16 16 C 1.54891 * 104.19611 * 95.67401 * 15 13 12 17 17 C 1.54887 * 102.74697 * 37.94551 * 16 15 13 18 18 C 1.53871 * 110.03725 * 265.02641 * 13 12 11 19 19 H 1.08994 * 110.03965 * 121.43148 * 18 13 12 20 20 F 1.39909 * 110.02930 * 0.02562 * 18 13 12 21 21 C 1.34505 * 108.64342 * 359.97438 * 12 11 10 22 22 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 23 23 H 1.08002 * 125.97607 * 0.02562 * 10 9 7 24 24 H 1.08991 * 110.48944 * 214.35317 * 15 13 12 25 25 H 1.09002 * 110.48392 * 337.00194 * 15 13 12 26 26 H 1.09001 * 110.75797 * 279.63255 * 16 15 13 27 27 H 1.08995 * 110.75406 * 156.25914 * 16 15 13 28 28 H 1.09000 * 110.48468 * 203.38157 * 17 16 15 29 29 H 1.09001 * 110.60368 * 80.79161 * 17 16 15 30 30 H 1.08002 * 126.40074 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7043 1.3463 0.0006 5 1 1.8856 2.3964 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0087 -1.2098 -0.0005 8 1 3.0888 -1.2098 -0.0001 9 6 1.3007 -2.4361 -0.0005 10 6 -0.1089 -2.5981 -0.0031 11 7 -0.3685 -3.8751 0.0028 12 7 0.8340 -4.5898 0.0042 13 6 0.9604 -6.0492 0.0109 14 1 0.0782 -6.5023 -0.4412 15 6 2.2274 -6.4734 -0.7602 16 6 3.3027 -6.6458 0.3413 17 6 2.4991 -7.2716 1.5082 18 6 1.1331 -6.5568 1.4532 19 1 0.3352 -7.2568 1.7009 20 9 1.1194 -5.4791 2.3454 21 6 1.8548 -3.7139 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 -0.8390 -1.8022 -0.0058 24 1 2.0597 -7.4164 -1.2804 25 1 2.5238 -5.6957 -1.4641 26 1 3.7167 -5.6802 0.6315 27 1 4.0910 -7.3213 0.0092 28 1 2.9937 -7.0765 2.4597 29 1 2.3749 -8.3439 1.3568 30 1 2.9072 -3.9562 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = 18.118995 kcal Electronic energy + Delta-G solvation = -15509.691805 eV Core-core repulsion = 12834.645038 eV Total energy + Delta-G solvation = -2675.046767 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.10534 -39.33877 -36.94809 -33.32811 -30.77224 -28.97083 -28.01029 -27.05611 -24.46274 -20.98009 -20.67239 -19.49363 -18.53645 -17.30772 -16.26903 -15.78610 -14.86346 -14.77478 -14.24038 -13.65537 -13.41416 -12.91788 -12.64105 -12.51313 -11.91387 -11.20205 -11.16558 -11.05113 -11.00192 -10.92344 -10.77596 -10.46332 -10.42200 -10.26897 -9.92079 -9.15773 -8.72605 -7.70216 -7.05675 -6.34217 -3.89874 3.09458 3.25276 3.30376 3.48427 3.83899 4.20703 4.41861 4.50207 4.59971 4.91391 4.98737 5.37658 5.40934 5.47111 5.60593 5.70272 5.74239 5.82904 5.95642 6.12442 6.21481 6.35893 6.60899 6.96746 7.41822 7.62594 7.77828 8.24516 8.63880 8.74947 9.16276 9.26446 9.61202 10.65718 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.045666 B = 0.007695 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.999054 B = 3637.784318 C = 3818.010199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.436 4.436 8 H 0.067 0.933 9 C -0.022 4.022 10 C 0.034 3.966 11 N -0.341 5.341 12 N -0.381 5.381 13 C 0.149 3.851 14 H 0.095 0.905 15 C -0.132 4.132 16 C -0.125 4.125 17 C -0.149 4.149 18 C 0.073 3.927 19 H 0.082 0.918 20 F -0.194 7.194 21 C -0.109 4.109 22 H 0.271 0.729 23 H 0.202 0.798 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 -11.328 0.259 12.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.471 4.471 8 H 0.085 0.915 9 C -0.031 4.031 10 C -0.153 4.153 11 N -0.162 5.162 12 N -0.169 5.169 13 C 0.043 3.957 14 H 0.113 0.887 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.187 4.187 18 C 0.035 3.965 19 H 0.100 0.900 20 F -0.174 7.174 21 C -0.249 4.249 22 H 0.082 0.918 23 H 0.218 0.782 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.085 -12.090 0.283 12.481 hybrid contribution 1.085 1.412 0.145 1.787 sum 4.170 -10.678 0.428 11.471 Atomic orbital electron populations 1.69465 1.07062 1.27615 1.43551 1.25621 0.94768 1.00485 0.93587 0.86187 0.80263 0.81616 0.77985 1.19115 1.20458 1.20455 1.18748 0.93526 0.89124 1.45693 0.91486 1.18186 0.91804 0.91601 1.01556 1.25070 0.98072 0.91802 1.00343 1.76542 1.05676 1.07093 1.26937 1.47131 1.04317 1.02421 1.63019 1.21912 0.99481 0.80095 0.94248 0.88705 1.22717 0.93992 1.02103 0.98224 1.22563 0.97400 1.01568 0.94715 1.22982 0.95300 0.99907 1.00481 1.22671 0.98610 0.86167 0.89066 0.89962 1.92883 1.97634 1.57775 1.69154 1.22029 0.92119 0.89627 1.21121 0.91774 0.78217 0.90263 0.89607 0.90482 0.91049 0.90303 0.90152 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.13 10.32 55.54 0.57 -22.55 16 2 C 0.06 1.75 5.49 -17.35 -0.10 1.65 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.44 -12.32 9.40 -37.76 -0.35 -12.67 16 8 H 0.07 1.82 7.84 -52.48 -0.41 1.41 16 9 C -0.02 -0.62 5.93 -106.83 -0.63 -1.25 16 10 C 0.03 0.97 10.91 -16.80 -0.18 0.79 16 11 N -0.34 -9.02 12.47 30.97 0.39 -8.63 16 12 N -0.38 -8.85 2.77 -52.83 -0.15 -9.00 16 13 C 0.15 2.57 4.00 -66.82 -0.27 2.31 16 14 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 15 C -0.13 -1.82 5.92 -25.07 -0.15 -1.97 16 16 C -0.13 -1.57 6.69 -24.74 -0.17 -1.74 16 17 C -0.15 -1.80 6.62 -25.07 -0.17 -1.97 16 18 C 0.07 1.15 4.68 -25.61 -0.12 1.03 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 20 F -0.19 -4.08 16.00 2.25 0.04 -4.05 16 21 C -0.11 -2.72 9.87 -16.00 -0.16 -2.88 16 22 H 0.27 6.83 8.30 -40.82 -0.34 6.49 16 23 H 0.20 5.75 5.77 -52.49 -0.30 5.44 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.34 7.28 -51.93 -0.38 0.97 16 26 H 0.08 1.13 6.74 -51.93 -0.35 0.78 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.14 3.08 6.35 -52.49 -0.33 2.74 16 LS Contribution 253.04 15.07 3.81 3.81 Total: -1.00 -31.44 253.04 -6.10 -37.53 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.44 Total: 4.36 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.29 Total: -16.70 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.81 Total: -40.18 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.05 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.44 -6.10 -37.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.653 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds