Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86798 * 120.00136 * 2 1 4 4 H 1.48504 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47070 * 299.99854 * 3 2 1 6 6 H 1.48501 * 109.47027 * 60.00129 * 3 2 1 7 7 C 1.39698 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.41600 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.41886 * 126.55523 * 0.15447 * 9 7 2 11 11 N 1.30315 * 108.04395 * 180.23088 * 10 9 7 12 12 N 1.39881 * 109.23479 * 359.77675 * 11 10 9 13 13 C 1.46491 * 125.67550 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.02262 * 26.42169 * 13 12 11 15 15 C 1.54272 * 110.03191 * 147.85916 * 13 12 11 16 16 C 1.54891 * 104.19611 * 95.67401 * 15 13 12 17 17 C 1.54887 * 102.74697 * 37.94551 * 16 15 13 18 18 C 1.53871 * 110.03725 * 265.02641 * 13 12 11 19 19 H 1.08994 * 110.03965 * 121.43148 * 18 13 12 20 20 F 1.39909 * 110.02930 * 0.02562 * 18 13 12 21 21 C 1.34505 * 108.64342 * 359.97438 * 12 11 10 22 22 H 0.97000 * 120.00129 * 359.97438 * 1 2 3 23 23 H 1.08002 * 125.97607 * 0.02562 * 10 9 7 24 24 H 1.08991 * 110.48944 * 214.35317 * 15 13 12 25 25 H 1.09002 * 110.48392 * 337.00194 * 15 13 12 26 26 H 1.09001 * 110.75797 * 279.63255 * 16 15 13 27 27 H 1.08995 * 110.75406 * 156.25914 * 16 15 13 28 28 H 1.09000 * 110.48468 * 203.38157 * 17 16 15 29 29 H 1.09001 * 110.60368 * 80.79161 * 17 16 15 30 30 H 1.08002 * 126.40074 * 179.97438 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7043 1.3463 0.0006 5 1 1.8856 2.3964 -1.2125 6 1 1.8855 2.3964 1.2125 7 6 2.0087 -1.2098 -0.0005 8 1 3.0888 -1.2098 -0.0001 9 6 1.3007 -2.4361 -0.0005 10 6 -0.1089 -2.5981 -0.0031 11 7 -0.3685 -3.8751 0.0028 12 7 0.8340 -4.5898 0.0042 13 6 0.9604 -6.0492 0.0109 14 1 0.0782 -6.5023 -0.4412 15 6 2.2274 -6.4734 -0.7602 16 6 3.3027 -6.6458 0.3413 17 6 2.4991 -7.2716 1.5082 18 6 1.1331 -6.5568 1.4532 19 1 0.3352 -7.2568 1.7009 20 9 1.1194 -5.4791 2.3454 21 6 1.8548 -3.7139 -0.0016 22 1 -0.4850 0.8400 0.0004 23 1 -0.8390 -1.8022 -0.0058 24 1 2.0597 -7.4164 -1.2804 25 1 2.5238 -5.6957 -1.4641 26 1 3.7167 -5.6802 0.6315 27 1 4.0910 -7.3213 0.0092 28 1 2.9937 -7.0765 2.4597 29 1 2.3749 -8.3439 1.3568 30 1 2.9072 -3.9562 -0.0018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158186.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = -1.248824 kcal Electronic energy + Delta-G solvation = -15510.531657 eV Core-core repulsion = 12834.645038 eV Total energy + Delta-G solvation = -2675.886619 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.58074 -41.22338 -38.27309 -35.30882 -32.40694 -30.98146 -29.19186 -28.62498 -26.40208 -22.55915 -21.78039 -21.49855 -20.27091 -19.14945 -17.55944 -17.42329 -16.67799 -16.19680 -15.79591 -15.05706 -14.91501 -14.60475 -14.41953 -14.24266 -13.32113 -13.00272 -12.90195 -12.70257 -12.46433 -12.22605 -12.10381 -12.05554 -11.78134 -11.62394 -11.56314 -11.10917 -10.78895 -9.67161 -9.09539 -8.33326 -5.99500 1.29172 1.44055 1.57981 1.58977 2.14256 2.35157 2.43192 3.28893 3.37985 3.59794 3.73859 3.94896 4.20160 4.30819 4.37365 4.38387 4.53316 4.64714 4.83861 4.92238 5.04467 5.10308 5.24562 5.31730 5.38485 5.58345 5.74554 6.13171 6.60139 6.77839 7.12319 7.18753 7.55867 8.68071 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.045666 B = 0.007695 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.999054 B = 3637.784318 C = 3818.010199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.017 3.983 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.473 4.473 8 H 0.067 0.933 9 C -0.069 4.069 10 C 0.001 3.999 11 N -0.356 5.356 12 N -0.365 5.365 13 C 0.124 3.876 14 H 0.108 0.892 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.136 4.136 18 C 0.059 3.941 19 H 0.111 0.889 20 F -0.230 7.230 21 C -0.088 4.088 22 H 0.277 0.723 23 H 0.186 0.814 24 H 0.122 0.878 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -13.285 0.081 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.507 4.507 8 H 0.085 0.915 9 C -0.079 4.079 10 C -0.183 4.183 11 N -0.180 5.180 12 N -0.152 5.152 13 C 0.021 3.979 14 H 0.126 0.874 15 C -0.162 4.162 16 C -0.161 4.161 17 C -0.173 4.173 18 C 0.022 3.978 19 H 0.129 0.871 20 F -0.211 7.211 21 C -0.231 4.231 22 H 0.088 0.912 23 H 0.202 0.798 24 H 0.141 0.859 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.141 0.859 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.615 -14.086 0.106 14.823 hybrid contribution 0.593 1.782 0.190 1.887 sum 5.208 -12.304 0.296 13.364 Atomic orbital electron populations 1.69577 1.08462 1.28783 1.43752 1.26543 0.95701 1.03959 0.92778 0.85039 0.78881 0.76633 0.78263 1.18498 1.19517 1.19811 1.19015 0.93686 0.90255 1.47765 0.91489 1.18616 0.92266 0.93177 1.03838 1.24831 0.98130 0.92283 1.03102 1.76423 1.07263 1.06703 1.27573 1.47609 1.02903 1.04779 1.59942 1.22674 1.02240 0.76383 0.96645 0.87417 1.22765 0.92215 1.03270 0.97929 1.22583 0.97969 1.01115 0.94434 1.22992 0.92379 1.01750 1.00186 1.23128 1.02310 0.85591 0.86753 0.87102 1.92816 1.97971 1.59905 1.70391 1.22357 0.93359 0.89181 1.18156 0.91228 0.79786 0.85935 0.91793 0.93387 0.87403 0.90452 0.85875 0.82333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.59 10.32 21.79 0.22 -49.36 16 2 C 0.02 0.92 5.49 85.17 0.47 1.38 16 3 Si 0.99 42.15 29.56 68.60 2.03 44.18 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.47 -27.57 9.40 23.45 0.22 -27.35 16 8 H 0.07 3.73 7.84 -2.91 -0.02 3.71 16 9 C -0.07 -4.05 5.93 -21.30 -0.13 -4.18 16 10 C 0.00 0.08 10.91 85.82 0.94 1.02 16 11 N -0.36 -19.30 12.47 -55.93 -0.70 -20.00 16 12 N -0.37 -16.93 2.77 -321.07 -0.89 -17.82 16 13 C 0.12 4.02 4.00 45.72 0.18 4.20 16 14 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 15 C -0.12 -2.97 5.92 31.67 0.19 -2.79 16 16 C -0.12 -2.63 6.69 31.89 0.21 -2.42 16 17 C -0.14 -2.70 6.62 31.67 0.21 -2.49 16 18 C 0.06 1.72 4.68 31.32 0.15 1.86 16 19 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 20 F -0.23 -9.56 16.00 44.97 0.72 -8.84 16 21 C -0.09 -4.41 9.87 84.53 0.83 -3.58 16 22 H 0.28 14.38 8.30 -92.71 -0.77 13.61 16 23 H 0.19 11.29 5.77 -2.91 -0.02 11.27 16 24 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.86 7.28 -2.39 -0.02 1.84 16 26 H 0.05 1.30 6.74 -2.39 -0.02 1.29 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.62 8.11 -2.39 -0.02 1.61 16 29 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.16 7.13 6.35 -2.91 -0.02 7.11 16 Total: -1.00 -71.82 253.04 5.80 -66.02 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.14 Total: 20.17 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.27 Total: -34.34 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -1.36 Total: -87.19 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 0.72 Total: -8.84 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -71.82 5.80 -66.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158186.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.769 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds