Wall clock time and date at job start Mon Mar 30 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34731 * 117.00100 * 2 1 4 4 O 1.21488 * 119.99765 * 0.02562 * 3 2 1 5 5 C 1.47584 * 119.99855 * 179.97438 * 3 2 1 6 6 N 1.31856 * 126.52815 * 0.20493 * 5 3 2 7 7 N 1.28467 * 110.06244 * 180.27437 * 6 5 3 8 8 H 0.96998 * 124.87746 * 179.74388 * 7 6 5 9 9 C 1.35046 * 110.24252 * 359.71451 * 7 6 5 10 10 C 1.35343 * 107.24057 * 359.97438 * 9 7 6 11 11 C 1.50702 * 127.24888 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.47404 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47070 * 60.02667 * 11 10 9 14 14 C 1.50700 * 109.47158 * 300.02840 * 11 10 9 15 15 H 1.07997 * 119.99727 * 5.61682 * 14 11 10 16 16 C 1.37879 * 119.99888 * 185.61860 * 14 11 10 17 17 N 1.31510 * 119.99781 * 197.56489 * 16 14 11 18 18 Si 1.86807 * 120.00018 * 17.57101 * 16 14 11 19 19 H 1.48494 * 109.46737 * 179.97438 * 18 16 14 20 20 H 1.48496 * 109.47035 * 299.99671 * 18 16 14 21 21 H 1.48504 * 109.46884 * 59.99761 * 18 16 14 22 22 H 1.09006 * 109.46671 * 299.99282 * 1 2 3 23 23 H 1.08995 * 109.47226 * 59.99679 * 1 2 3 24 24 H 1.08995 * 109.47022 * 180.02562 * 1 2 3 25 25 H 1.07998 * 126.37812 * 180.02562 * 9 7 6 26 26 H 1.09000 * 109.47035 * 306.23372 * 13 11 10 27 27 H 1.09003 * 109.47484 * 66.23285 * 13 11 10 28 28 H 1.08999 * 109.47295 * 186.23544 * 13 11 10 29 29 H 0.97002 * 120.00388 * 354.84687 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2776 0.0006 6 7 4.3767 0.2606 -0.0027 7 7 5.5879 0.6886 0.0048 8 1 6.3760 0.1231 0.0078 9 6 5.6063 2.0389 0.0072 10 6 4.3193 2.4576 0.0002 11 6 3.8230 3.8806 -0.0009 12 1 2.7330 3.8853 -0.0068 13 6 4.3428 4.6011 -1.2465 14 6 4.3217 4.5875 1.2331 15 1 5.0095 4.0891 1.9000 16 6 3.8998 5.8705 1.5105 17 7 4.5702 6.6130 2.3641 18 14 2.3757 6.5540 0.6740 19 1 2.1364 7.9434 1.1401 20 1 2.5760 6.5525 -0.7974 21 1 1.2030 5.7090 1.0148 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 6.4844 2.6676 0.0128 26 1 5.4270 4.5009 -1.2983 27 1 3.8942 4.1587 -2.1360 28 1 4.0777 5.6570 -1.1928 29 1 5.3166 6.2344 2.8545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220446.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:53 Heat of formation + Delta-G solvation = -38.598140 kcal Electronic energy + Delta-G solvation = -15432.516163 eV Core-core repulsion = 12742.637167 eV Total energy + Delta-G solvation = -2689.878996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.66025 -41.14879 -37.58685 -36.52209 -33.83019 -32.70009 -30.44210 -28.78537 -26.67883 -25.28601 -23.99880 -21.67330 -20.77054 -19.32909 -19.03974 -18.43279 -17.56278 -17.51466 -16.30480 -15.91341 -15.22062 -14.89438 -14.56854 -14.22445 -14.11835 -13.80555 -13.15821 -13.01580 -12.94374 -12.36214 -12.04280 -11.90826 -11.80078 -11.44335 -11.37533 -10.98349 -10.45274 -10.29316 -9.78575 -8.63330 -6.25877 0.25198 1.20021 1.48015 1.53061 1.57562 1.76360 2.10702 2.21077 2.50462 3.14272 3.42611 4.01941 4.22609 4.33865 4.35252 4.51723 4.69317 4.72345 4.87108 4.92084 5.05438 5.16009 5.39772 5.47594 5.83119 6.08335 6.11836 6.15620 6.63163 6.69711 6.91275 7.46535 8.73097 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.025480 B = 0.011011 C = 0.008536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.620284 B = 2542.301237 C = 3279.513519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.552 3.448 4 O -0.518 6.518 5 C -0.044 4.044 6 N -0.240 5.240 7 N -0.350 5.350 8 H 0.467 0.533 9 C -0.008 4.008 10 C -0.119 4.119 11 C 0.062 3.938 12 H 0.039 0.961 13 C -0.135 4.135 14 C -0.580 4.580 15 H 0.027 0.973 16 C -0.014 4.014 17 N -0.941 5.941 18 Si 1.073 2.927 19 H -0.288 1.288 20 H -0.242 1.242 21 H -0.281 1.281 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.140 0.860 25 H 0.206 0.794 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 -13.631 -7.754 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.396 3.604 4 O -0.405 6.405 5 C -0.200 4.200 6 N -0.081 5.081 7 N -0.069 5.069 8 H 0.316 0.684 9 C -0.152 4.152 10 C -0.128 4.128 11 C 0.041 3.959 12 H 0.057 0.943 13 C -0.193 4.193 14 C -0.618 4.618 15 H 0.045 0.955 16 C -0.212 4.212 17 N -0.578 5.578 18 Si 0.896 3.104 19 H -0.214 1.214 20 H -0.166 1.166 21 H -0.207 1.207 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.158 0.842 25 H 0.222 0.778 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.620 -13.128 -7.922 15.555 hybrid contribution 1.328 -0.574 0.805 1.656 sum -1.292 -13.702 -7.117 15.494 Atomic orbital electron populations 1.23649 0.74129 1.06050 1.02762 1.86606 1.25341 1.30963 1.83885 1.19779 0.86696 0.81755 0.72208 1.90842 1.65971 1.36813 1.46902 1.20736 0.91147 0.91656 1.16462 1.73475 0.90907 1.25594 1.18088 1.43281 1.06494 1.06243 1.50909 0.68367 1.22830 0.99740 0.84801 1.07829 1.20691 0.92545 0.95782 1.03791 1.17690 0.96849 0.86887 0.94426 0.94261 1.22075 1.00863 0.99822 0.96534 1.22110 1.29072 1.01501 1.09082 0.95508 1.26822 1.02351 0.94463 0.97594 1.70994 1.20911 1.36924 1.28971 0.83693 0.73599 0.75256 0.77839 1.21404 1.16584 1.20718 0.92175 0.91488 0.84190 0.77772 0.92624 0.93794 0.93687 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.57 113.37 1.20 1.82 15 2 O -0.35 -11.59 10.58 -56.41 -0.60 -12.18 15 3 C 0.55 22.31 7.97 70.29 0.56 22.87 15 4 O -0.52 -23.72 14.53 19.87 0.29 -23.43 15 5 C -0.04 -1.79 7.17 42.42 0.30 -1.48 15 6 N -0.24 -8.08 12.24 -48.22 -0.59 -8.67 15 7 N -0.35 -9.27 6.83 -57.52 -0.39 -9.66 15 8 H 0.47 7.22 8.96 -219.99 -1.97 5.25 15 9 C -0.01 -0.27 11.42 83.53 0.95 0.68 15 10 C -0.12 -5.03 4.89 -19.72 -0.10 -5.13 15 11 C 0.06 3.02 2.20 -12.28 -0.03 2.99 15 12 H 0.04 2.09 4.47 -2.39 -0.01 2.08 15 13 C -0.14 -5.83 8.82 71.98 0.64 -5.19 15 14 C -0.58 -33.10 8.70 25.60 0.22 -32.88 15 15 H 0.03 1.63 7.94 -2.91 -0.02 1.61 15 16 C -0.01 -0.84 5.29 84.66 0.45 -0.39 15 17 N -0.94 -59.30 13.70 21.45 0.29 -59.00 15 18 Si 1.07 53.31 26.29 68.60 1.80 55.12 15 19 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 20 H -0.24 -10.68 5.76 99.48 0.57 -10.11 15 21 H -0.28 -13.99 7.11 99.48 0.71 -13.29 15 22 H 0.06 1.44 8.14 -2.38 -0.02 1.42 15 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 15 24 H 0.14 2.03 8.14 -2.39 -0.02 2.02 15 25 H 0.21 5.74 8.06 -2.91 -0.02 5.71 15 26 H 0.05 2.18 7.88 -2.39 -0.02 2.16 15 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 15 28 H 0.04 2.01 4.89 -2.39 -0.01 2.00 15 29 H 0.25 15.99 8.73 -92.71 -0.81 15.18 15 Total: -1.00 -74.84 254.64 4.04 -70.80 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -0.96 Total: 3.73 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.20 Total: -16.70 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -0.69 Total: -77.33 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.31 Total: -35.62 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 1.80 Total: 55.12 kcal Total: -74.84 4.04 -70.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220446.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.198 kcal (2) G-P(sol) polarization free energy of solvation -74.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds