Wall clock time and date at job start Mon Mar 30 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42896 * 109.47021 * 2 1 4 4 C 1.35699 * 117.00050 * 179.97438 * 3 2 1 5 5 C 1.38660 * 120.27294 * 270.27684 * 4 3 2 6 6 F 1.35101 * 119.99394 * 0.02562 * 5 4 3 7 7 C 1.38451 * 120.01043 * 180.29957 * 5 4 3 8 8 C 1.38835 * 120.56727 * 359.72153 * 7 5 4 9 9 C 1.50701 * 119.72325 * 180.02562 * 8 7 5 10 10 C 1.36468 * 120.55279 * 359.97194 * 8 7 5 11 11 C 1.40762 * 119.97283 * 0.02864 * 10 8 7 12 12 C 1.41162 * 120.28136 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00096 * 205.41673 * 12 11 10 14 14 C 1.39928 * 119.99727 * 25.41245 * 12 11 10 15 15 N 1.30870 * 120.00138 * 26.50285 * 14 12 11 16 16 Si 1.86799 * 119.99833 * 206.49364 * 14 12 11 17 17 H 1.48512 * 109.46903 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47332 * 300.00344 * 16 14 12 19 19 H 1.48501 * 109.46979 * 60.00496 * 16 14 12 20 20 H 1.09008 * 109.46672 * 60.00083 * 1 2 3 21 21 H 1.08994 * 109.46788 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47079 * 300.00193 * 1 2 3 23 23 H 1.08996 * 109.47079 * 239.99807 * 2 1 3 24 24 H 1.08995 * 109.46925 * 119.99765 * 2 1 3 25 25 H 1.07998 * 119.72454 * 179.73672 * 7 5 4 26 26 H 1.09004 * 109.46640 * 269.97248 * 9 8 7 27 27 H 1.08994 * 109.47401 * 29.97026 * 9 8 7 28 28 H 1.09003 * 109.46858 * 149.97847 * 9 8 7 29 29 H 1.08004 * 120.01291 * 180.02562 * 10 8 7 30 30 H 0.97002 * 119.99782 * 5.88300 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.0449 1.6111 1.1983 6 9 3.3810 1.5174 2.3712 7 6 5.4166 1.7988 1.1926 8 6 6.1108 1.8967 -0.0058 9 6 7.6039 2.1003 0.0102 10 6 5.4526 1.8089 -1.1980 11 6 4.0581 1.6182 -1.2190 12 6 3.3706 1.5271 -2.4485 13 1 2.3242 1.7893 -2.5028 14 6 4.0447 1.0972 -3.5968 15 7 5.0872 0.3134 -3.4888 16 14 3.4566 1.6418 -5.2841 17 1 4.3338 1.0532 -6.3279 18 1 2.0605 1.1815 -5.4941 19 1 3.5077 3.1234 -5.3716 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.9514 1.8694 2.1282 26 1 7.8249 3.1677 0.0162 27 1 8.0243 1.6372 0.9028 28 1 8.0424 1.6435 -0.8771 29 1 6.0014 1.8859 -2.1250 30 1 5.3415 -0.0386 -2.6213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261240108.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:42 Heat of formation + Delta-G solvation = -91.727223 kcal Electronic energy + Delta-G solvation = -15420.604676 eV Core-core repulsion = 12708.501869 eV Total energy + Delta-G solvation = -2712.102808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.83415 -38.50193 -36.52830 -34.18363 -31.56670 -29.98775 -29.17531 -25.82341 -24.98806 -22.26241 -21.36432 -20.29660 -17.96388 -16.68048 -15.92804 -15.55128 -14.76083 -14.24713 -14.16730 -13.83024 -13.41184 -12.94727 -12.83441 -12.74962 -12.21660 -12.02006 -11.75145 -11.37539 -11.05391 -10.95525 -10.64918 -10.52888 -10.40394 -10.22964 -9.69936 -9.20794 -8.67748 -7.73719 -7.54221 -7.22300 -4.62865 2.38062 2.53134 3.08508 3.16436 3.29655 3.89377 4.24579 4.70143 5.25387 5.39302 5.61256 5.78580 5.84833 5.90804 6.03794 6.15464 6.20231 6.34330 6.41762 6.46371 6.56590 6.62565 6.80618 7.14766 7.25426 7.43564 7.58265 7.73931 7.91757 8.01452 8.33458 8.62460 8.92095 9.83379 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.013278 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.407163 B = 2108.304612 C = 3335.600745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 O -0.315 6.315 4 C -0.076 4.076 5 C 0.121 3.879 6 F -0.159 7.159 7 C -0.285 4.285 8 C -0.035 4.035 9 C -0.106 4.106 10 C -0.215 4.215 11 C 0.102 3.898 12 C -0.490 4.490 13 H 0.087 0.913 14 C 0.038 3.962 15 N -0.782 5.782 16 Si 1.066 2.934 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.271 1.271 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -0.299 1.223 1.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.232 6.232 4 C -0.122 4.122 5 C 0.102 3.898 6 F -0.138 7.138 7 C -0.305 4.305 8 C -0.035 4.035 9 C -0.162 4.162 10 C -0.234 4.234 11 C 0.098 3.902 12 C -0.516 4.516 13 H 0.105 0.895 14 C -0.186 4.186 15 N -0.403 5.403 16 Si 0.889 3.111 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.197 1.197 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.852 -0.307 -0.352 0.972 hybrid contribution -0.296 -0.203 2.021 2.052 sum -1.148 -0.510 1.668 2.089 Atomic orbital electron populations 1.21687 0.94693 1.01268 1.02497 1.22531 0.94178 0.85646 0.99573 1.86011 1.18494 1.24573 1.94093 1.18384 0.83891 1.19162 0.90733 1.17955 0.90215 1.02088 0.79575 1.91333 1.81481 1.93986 1.47021 1.19991 0.91521 1.21406 0.97551 1.19000 0.94479 0.97363 0.92684 1.20703 0.92948 1.01067 1.01514 1.20747 0.94569 1.11627 0.96500 1.17690 0.91487 0.89192 0.91859 1.20573 1.00004 1.38236 0.92820 0.89535 1.27194 0.92904 0.92633 1.05823 1.70488 1.20322 1.17889 1.31633 0.83616 0.76856 0.77655 0.72992 1.19697 1.19864 1.19664 0.92034 0.91854 0.92503 0.93257 0.94838 0.87750 0.92158 0.92628 0.92165 0.86859 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 10.28 37.16 0.38 -1.99 16 2 C 0.06 1.17 6.78 37.16 0.25 1.42 16 3 O -0.31 -7.81 9.22 -18.80 -0.17 -7.98 16 4 C -0.08 -1.97 5.77 -38.28 -0.22 -2.19 16 5 C 0.12 2.99 7.30 -39.35 -0.29 2.71 16 6 F -0.16 -3.79 17.11 2.25 0.04 -3.75 16 7 C -0.28 -6.51 9.66 -39.28 -0.38 -6.89 16 8 C -0.03 -0.78 5.84 -105.04 -0.61 -1.39 16 9 C -0.11 -1.87 9.99 36.01 0.36 -1.51 16 10 C -0.22 -5.30 7.55 -39.27 -0.30 -5.60 16 11 C 0.10 2.67 5.30 -106.69 -0.57 2.10 16 12 C -0.49 -12.69 8.64 -37.84 -0.33 -13.02 16 13 H 0.09 2.26 7.72 -52.48 -0.41 1.86 16 14 C 0.04 0.92 4.91 -17.33 -0.09 0.84 16 15 N -0.78 -19.66 12.32 55.55 0.68 -18.97 16 16 Si 1.07 20.69 30.01 -169.99 -5.10 15.59 16 17 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 20 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.11 2.82 6.53 -52.48 -0.34 2.47 16 30 H 0.30 7.77 6.79 -40.82 -0.28 7.49 16 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -27.32 266.11 -5.94 -33.26 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.62 Total: 3.36 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -1.78 Total: -25.53 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.68 Total: -18.97 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.17 Total: -7.98 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.10 Total: 15.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.32 -5.94 -33.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240108.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.462 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds