Wall clock time and date at job start Mon Mar 30 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42896 * 109.47021 * 2 1 4 4 C 1.35699 * 117.00050 * 179.97438 * 3 2 1 5 5 C 1.38660 * 120.27294 * 270.27684 * 4 3 2 6 6 F 1.35101 * 119.99394 * 0.02562 * 5 4 3 7 7 C 1.38451 * 120.01043 * 180.29957 * 5 4 3 8 8 C 1.38835 * 120.56727 * 359.72153 * 7 5 4 9 9 C 1.50701 * 119.72325 * 180.02562 * 8 7 5 10 10 C 1.36468 * 120.55279 * 359.97194 * 8 7 5 11 11 C 1.40762 * 119.97283 * 0.02864 * 10 8 7 12 12 C 1.41162 * 120.28136 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00096 * 205.41673 * 12 11 10 14 14 C 1.39928 * 119.99727 * 25.41245 * 12 11 10 15 15 N 1.30870 * 120.00138 * 26.50285 * 14 12 11 16 16 Si 1.86799 * 119.99833 * 206.49364 * 14 12 11 17 17 H 1.48512 * 109.46903 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47332 * 300.00344 * 16 14 12 19 19 H 1.48501 * 109.46979 * 60.00496 * 16 14 12 20 20 H 1.09008 * 109.46672 * 60.00083 * 1 2 3 21 21 H 1.08994 * 109.46788 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47079 * 300.00193 * 1 2 3 23 23 H 1.08996 * 109.47079 * 239.99807 * 2 1 3 24 24 H 1.08995 * 109.46925 * 119.99765 * 2 1 3 25 25 H 1.07998 * 119.72454 * 179.73672 * 7 5 4 26 26 H 1.09004 * 109.46640 * 269.97248 * 9 8 7 27 27 H 1.08994 * 109.47401 * 29.97026 * 9 8 7 28 28 H 1.09003 * 109.46858 * 149.97847 * 9 8 7 29 29 H 1.08004 * 120.01291 * 180.02562 * 10 8 7 30 30 H 0.97002 * 119.99782 * 5.88300 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5251 0.0005 5 6 4.0449 1.6111 1.1983 6 9 3.3810 1.5174 2.3712 7 6 5.4166 1.7988 1.1926 8 6 6.1108 1.8967 -0.0058 9 6 7.6039 2.1003 0.0102 10 6 5.4526 1.8089 -1.1980 11 6 4.0581 1.6182 -1.2190 12 6 3.3706 1.5271 -2.4485 13 1 2.3242 1.7893 -2.5028 14 6 4.0447 1.0972 -3.5968 15 7 5.0872 0.3134 -3.4888 16 14 3.4566 1.6418 -5.2841 17 1 4.3338 1.0532 -6.3279 18 1 2.0605 1.1815 -5.4941 19 1 3.5077 3.1234 -5.3716 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 5.9514 1.8694 2.1282 26 1 7.8249 3.1677 0.0162 27 1 8.0243 1.6372 0.9028 28 1 8.0424 1.6435 -0.8771 29 1 6.0014 1.8859 -2.1250 30 1 5.3415 -0.0386 -2.6213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261240108.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:41 Heat of formation + Delta-G solvation = -105.815829 kcal Electronic energy + Delta-G solvation = -15421.215604 eV Core-core repulsion = 12708.501869 eV Total energy + Delta-G solvation = -2712.713735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.74206 -40.37011 -38.34942 -36.03531 -33.21874 -31.61410 -31.05207 -27.61781 -26.76709 -23.85283 -23.25492 -22.13192 -19.83218 -18.53150 -17.78453 -17.42929 -16.64971 -15.95033 -15.77195 -15.62579 -15.27336 -14.69051 -14.55288 -14.31322 -13.90288 -13.40838 -13.34645 -13.01331 -12.65221 -12.53652 -12.34730 -12.21460 -12.00350 -11.93449 -11.48954 -11.01467 -10.53549 -9.65338 -9.45876 -9.10313 -6.59538 0.49525 0.65330 1.50221 1.59518 1.80462 2.27428 2.43972 2.91675 3.38019 3.53646 4.06103 4.14591 4.30072 4.37345 4.46112 4.62549 4.67254 4.73636 4.84655 4.92299 4.97642 5.10475 5.17478 5.31322 5.35862 5.51298 5.66901 5.82171 6.00538 6.16171 6.42596 6.70360 7.02067 7.89089 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.013278 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.407163 B = 2108.304612 C = 3335.600745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.052 3.948 3 O -0.334 6.334 4 C -0.098 4.098 5 C 0.104 3.896 6 F -0.157 7.157 7 C -0.278 4.278 8 C -0.033 4.033 9 C -0.102 4.102 10 C -0.230 4.230 11 C 0.077 3.923 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.010 3.990 15 N -0.794 5.794 16 Si 1.115 2.885 17 H -0.265 1.265 18 H -0.259 1.259 19 H -0.262 1.262 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.064 0.936 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.134 0.866 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -0.127 1.328 1.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 O -0.251 6.251 4 C -0.144 4.144 5 C 0.084 3.916 6 F -0.136 7.136 7 C -0.297 4.297 8 C -0.034 4.034 9 C -0.158 4.158 10 C -0.249 4.249 11 C 0.073 3.927 12 C -0.544 4.544 13 H 0.091 0.909 14 C -0.209 4.209 15 N -0.416 5.416 16 Si 0.931 3.069 17 H -0.190 1.190 18 H -0.184 1.184 19 H -0.187 1.187 20 H 0.078 0.922 21 H 0.115 0.885 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.152 0.848 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.480 -0.141 -0.217 0.545 hybrid contribution -0.399 -0.273 2.136 2.190 sum -0.880 -0.414 1.919 2.151 Atomic orbital electron populations 1.21690 0.91067 1.03608 1.02809 1.22741 0.97046 0.83826 0.98679 1.85945 1.18194 1.26804 1.94146 1.18675 0.84510 1.19901 0.91305 1.18196 0.91131 1.02845 0.79415 1.91328 1.81602 1.94034 1.46609 1.20391 0.90884 1.19468 0.99005 1.19502 0.97131 0.95198 0.91539 1.20760 0.89278 1.02745 1.03026 1.20795 0.94098 1.12735 0.97292 1.18045 0.92612 0.89720 0.92316 1.20638 0.99663 1.40158 0.93925 0.90924 1.28500 0.92167 0.91494 1.08725 1.70594 1.21339 1.19004 1.30631 0.83035 0.77176 0.77773 0.68931 1.18962 1.18359 1.18703 0.92163 0.88476 0.91695 0.95074 0.94772 0.84838 0.90109 0.90140 0.91697 0.87588 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 10.28 71.99 0.74 -3.53 16 2 C 0.05 2.19 6.78 71.99 0.49 2.68 16 3 O -0.33 -16.91 9.22 -90.19 -0.83 -17.74 16 4 C -0.10 -5.21 5.77 23.11 0.13 -5.07 16 5 C 0.10 5.10 7.30 22.42 0.16 5.26 16 6 F -0.16 -7.37 17.11 44.97 0.77 -6.61 16 7 C -0.28 -12.25 9.66 22.46 0.22 -12.03 16 8 C -0.03 -1.44 5.84 -20.13 -0.12 -1.56 16 9 C -0.10 -3.29 9.99 71.24 0.71 -2.58 16 10 C -0.23 -11.43 7.55 22.47 0.17 -11.26 16 11 C 0.08 4.13 5.30 -21.21 -0.11 4.02 16 12 C -0.52 -27.60 8.64 23.40 0.20 -27.40 16 13 H 0.07 3.95 7.72 -2.91 -0.02 3.93 16 14 C 0.01 0.48 4.91 85.25 0.42 0.90 16 15 N -0.79 -40.55 12.32 21.83 0.27 -40.28 16 16 Si 1.11 41.39 30.01 68.60 2.06 43.45 16 17 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 18 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 21 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 22 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 28 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.11 5.35 6.53 -2.91 -0.02 5.33 16 30 H 0.29 15.25 6.79 -92.71 -0.63 14.62 16 Total: -1.00 -59.53 266.11 6.55 -52.98 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.27 Total: 18.77 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 3.01 Total: -50.57 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.27 Total: -40.28 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.83 Total: -17.74 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.77 Total: -6.61 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.06 Total: 43.45 kcal Total: -59.53 6.55 -52.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240108.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.840 kcal (2) G-P(sol) polarization free energy of solvation -59.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds