Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99534 * 2 1 4 4 C 1.38709 * 120.04581 * 359.97438 * 3 2 1 5 5 C 1.38342 * 119.92036 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.99802 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00298 * 0.02562 * 5 4 3 8 8 C 1.38206 * 120.08742 * 359.74142 * 7 5 4 9 9 C 1.38170 * 120.07818 * 0.50984 * 8 7 5 10 10 C 1.50703 * 120.00102 * 179.76941 * 9 8 7 11 11 H 1.09009 * 109.47059 * 179.72279 * 10 9 8 12 12 C 1.53000 * 109.47221 * 59.72664 * 10 9 8 13 13 C 1.50693 * 109.47317 * 299.72199 * 10 9 8 14 14 H 1.08005 * 120.00160 * 5.42221 * 13 10 9 15 15 C 1.37876 * 120.00441 * 185.14136 * 13 10 9 16 16 N 1.31512 * 119.99771 * 355.41166 * 15 13 10 17 17 Si 1.86805 * 120.00294 * 175.41107 * 15 13 10 18 18 H 1.48500 * 109.46964 * 95.00247 * 17 15 13 19 19 H 1.48506 * 109.46868 * 215.00004 * 17 15 13 20 20 H 1.48502 * 109.46969 * 334.99917 * 17 15 13 21 21 H 1.09000 * 109.46551 * 299.99123 * 1 2 3 22 22 H 1.08998 * 109.47488 * 59.99458 * 1 2 3 23 23 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.03911 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.95450 * 180.02562 * 7 5 4 26 26 H 1.08002 * 119.96268 * 180.27646 * 8 7 5 27 27 H 1.08994 * 109.47338 * 174.92839 * 12 10 9 28 28 H 1.09004 * 109.46671 * 294.92167 * 12 10 9 29 29 H 1.08995 * 109.47101 * 54.92236 * 12 10 9 30 30 H 0.97004 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9220 3.6061 -0.0011 6 9 1.1885 4.7407 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5163 0.0038 9 6 3.4313 1.2846 -0.0009 10 6 4.2531 0.0214 -0.0003 11 1 3.5898 -0.8436 0.0006 12 6 5.1361 -0.0119 1.2488 13 6 5.1221 -0.0132 -1.2309 14 1 5.1489 0.8365 -1.8971 15 6 5.8874 -1.1272 -1.5035 16 7 5.9292 -2.1224 -0.6448 17 14 6.8649 -1.2230 -3.0925 18 1 8.2558 -0.7649 -2.8464 19 1 6.8845 -2.6264 -3.5777 20 1 6.2313 -0.3540 -4.1165 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2128 2.3198 -0.0005 25 1 3.7969 4.6375 -0.0016 26 1 5.1360 2.5729 0.0079 27 1 5.6631 -0.9648 1.2959 28 1 5.8601 0.8017 1.2036 29 1 4.5144 0.1038 2.1365 30 1 6.4673 -2.9063 -0.8367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261247566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = -69.125126 kcal Electronic energy + Delta-G solvation = -15229.592526 eV Core-core repulsion = 12518.469819 eV Total energy + Delta-G solvation = -2711.122707 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.51570 -39.67352 -36.90711 -34.21087 -31.35687 -29.81686 -28.28506 -26.70463 -25.08164 -22.70102 -21.87991 -19.80554 -17.97406 -16.71746 -16.04670 -15.48792 -15.24583 -15.08954 -14.96988 -14.28222 -14.06702 -13.45777 -12.80991 -12.44075 -12.03139 -11.81753 -11.43178 -11.20398 -10.99600 -10.92596 -10.81780 -10.51216 -10.25830 -10.09935 -9.42776 -8.92551 -8.36584 -8.27233 -7.46326 -5.98917 -4.04106 1.73697 1.83803 3.30936 3.38322 3.42668 3.71053 4.18921 4.46691 4.68824 5.16131 5.29444 5.33465 5.38116 5.42195 5.57233 5.68544 5.93958 6.20222 6.48644 6.61290 6.71223 6.83822 7.03831 7.12785 7.21482 7.40172 7.73770 7.84088 8.03906 8.08703 8.40664 8.98708 9.59627 11.07871 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.008610 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.189481 B = 3251.230546 C = 3619.159477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.297 6.297 3 C 0.141 3.859 4 C -0.248 4.248 5 C 0.100 3.900 6 F -0.151 7.151 7 C -0.191 4.191 8 C -0.054 4.054 9 C -0.066 4.066 10 C 0.076 3.924 11 H 0.049 0.951 12 C -0.128 4.128 13 C -0.508 4.508 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.050 0.950 22 H 0.050 0.950 23 H 0.097 0.903 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.008 0.992 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 6.513 2.049 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.096 3.904 4 C -0.268 4.268 5 C 0.081 3.919 6 F -0.129 7.129 7 C -0.210 4.210 8 C -0.072 4.072 9 C -0.067 4.067 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.185 4.185 13 C -0.546 4.546 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.115 0.885 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.157 0.843 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.027 0.973 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.661 6.171 2.072 10.053 hybrid contribution 0.077 0.301 -0.924 0.974 sum -7.584 6.472 1.149 10.036 Atomic orbital electron populations 1.23012 0.79683 1.03550 1.00709 1.86256 1.20108 1.26209 1.88365 1.18687 0.92068 0.83297 0.96363 1.20968 1.00209 0.91461 1.14155 1.17234 0.89201 0.81075 1.04359 1.91426 1.77642 1.49526 1.94343 1.20995 0.91619 0.99927 1.08414 1.20803 1.00466 0.89969 0.95964 1.20236 0.90101 0.98474 0.97868 1.17798 0.92928 0.88867 0.94670 0.93252 1.21781 0.98826 1.02568 0.95367 1.21112 1.24786 1.01431 1.07250 0.92503 1.24945 0.96616 0.95738 0.96556 1.69922 1.40598 1.07339 1.34782 0.86603 0.80216 0.77344 0.84002 1.20786 1.21193 1.19863 0.93190 0.93091 0.88490 0.85263 0.85588 0.84296 0.90260 0.95137 0.97291 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.30 -5.74 9.26 -19.43 -0.18 -5.92 16 3 C 0.14 2.82 6.66 -39.23 -0.26 2.55 16 4 C -0.25 -4.31 9.02 -39.37 -0.35 -4.67 16 5 C 0.10 1.75 7.30 -39.44 -0.29 1.46 16 6 F -0.15 -2.49 17.27 2.25 0.04 -2.45 16 7 C -0.19 -3.28 10.02 -39.49 -0.40 -3.67 16 8 C -0.05 -1.04 8.71 -39.62 -0.34 -1.39 16 9 C -0.07 -1.44 4.76 -104.46 -0.50 -1.93 16 10 C 0.08 1.90 2.39 -92.93 -0.22 1.68 16 11 H 0.05 1.36 6.99 -51.92 -0.36 1.00 16 12 C -0.13 -3.04 8.69 37.16 0.32 -2.72 16 13 C -0.51 -13.74 8.21 -34.44 -0.28 -14.02 16 14 H 0.06 1.53 7.54 -52.48 -0.40 1.13 16 15 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 16 N -0.89 -25.19 11.58 55.43 0.64 -24.55 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 22 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 23 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.13 1.89 6.30 -52.49 -0.33 1.56 16 25 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 26 H 0.14 2.60 7.62 -52.49 -0.40 2.20 16 27 H 0.08 2.06 6.45 -51.93 -0.33 1.73 16 28 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 260.32 15.07 3.92 3.92 Total: -1.00 -28.99 260.32 -5.44 -34.43 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.42 Total: -1.83 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -1.43 Total: -19.75 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.64 Total: -24.55 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.18 Total: -5.92 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.99 -5.44 -34.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.696 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds