Wall clock time and date at job start Mon Mar 30 2020 03:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99534 * 2 1 4 4 C 1.38709 * 120.04581 * 359.97438 * 3 2 1 5 5 C 1.38342 * 119.92036 * 180.02562 * 4 3 2 6 6 F 1.35102 * 119.99802 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00298 * 0.02562 * 5 4 3 8 8 C 1.38206 * 120.08742 * 359.74142 * 7 5 4 9 9 C 1.38170 * 120.07818 * 0.50984 * 8 7 5 10 10 C 1.50703 * 120.00102 * 179.76941 * 9 8 7 11 11 H 1.09009 * 109.47059 * 179.72279 * 10 9 8 12 12 C 1.53000 * 109.47221 * 59.72664 * 10 9 8 13 13 C 1.50693 * 109.47317 * 299.72199 * 10 9 8 14 14 H 1.08005 * 120.00160 * 5.42221 * 13 10 9 15 15 C 1.37876 * 120.00441 * 185.14136 * 13 10 9 16 16 N 1.31512 * 119.99771 * 355.41166 * 15 13 10 17 17 Si 1.86805 * 120.00294 * 175.41107 * 15 13 10 18 18 H 1.48500 * 109.46964 * 95.00247 * 17 15 13 19 19 H 1.48506 * 109.46868 * 215.00004 * 17 15 13 20 20 H 1.48502 * 109.46969 * 334.99917 * 17 15 13 21 21 H 1.09000 * 109.46551 * 299.99123 * 1 2 3 22 22 H 1.08998 * 109.47488 * 59.99458 * 1 2 3 23 23 H 1.09000 * 109.46974 * 179.97438 * 1 2 3 24 24 H 1.07996 * 120.03911 * 0.02562 * 4 3 2 25 25 H 1.08007 * 119.95450 * 180.02562 * 7 5 4 26 26 H 1.08002 * 119.96268 * 180.27646 * 8 7 5 27 27 H 1.08994 * 109.47338 * 174.92839 * 12 10 9 28 28 H 1.09004 * 109.46671 * 294.92167 * 12 10 9 29 29 H 1.08995 * 109.47101 * 54.92236 * 12 10 9 30 30 H 0.97004 * 119.99981 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3748 -0.0005 5 6 1.9220 3.6061 -0.0011 6 9 1.1885 4.7407 -0.0021 7 6 3.3054 3.6757 -0.0016 8 6 4.0575 2.5163 0.0038 9 6 3.4313 1.2846 -0.0009 10 6 4.2531 0.0214 -0.0003 11 1 3.5898 -0.8436 0.0006 12 6 5.1361 -0.0119 1.2488 13 6 5.1221 -0.0132 -1.2309 14 1 5.1489 0.8365 -1.8971 15 6 5.8874 -1.1272 -1.5035 16 7 5.9292 -2.1224 -0.6448 17 14 6.8649 -1.2230 -3.0925 18 1 8.2558 -0.7649 -2.8464 19 1 6.8845 -2.6264 -3.5777 20 1 6.2313 -0.3540 -4.1165 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2128 2.3198 -0.0005 25 1 3.7969 4.6375 -0.0016 26 1 5.1360 2.5729 0.0079 27 1 5.6631 -0.9648 1.2959 28 1 5.8601 0.8017 1.2036 29 1 4.5144 0.1038 2.1365 30 1 6.4673 -2.9063 -0.8367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261247566.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:23 Heat of formation + Delta-G solvation = -85.231740 kcal Electronic energy + Delta-G solvation = -15230.290961 eV Core-core repulsion = 12518.469819 eV Total energy + Delta-G solvation = -2711.821142 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85539 -41.09602 -38.33839 -36.06971 -33.25331 -31.21114 -29.84658 -27.94726 -27.15053 -24.32145 -23.28267 -21.54123 -19.34025 -18.45297 -17.69487 -16.90435 -16.80715 -16.61265 -16.24984 -15.93363 -15.40131 -14.96532 -14.65605 -13.89816 -13.51511 -13.49081 -13.18514 -12.84905 -12.61997 -12.50242 -12.45930 -12.19302 -11.97549 -11.79685 -11.23835 -10.91412 -10.44211 -9.70445 -8.96828 -8.06133 -6.18483 0.28670 0.41591 1.42864 1.44482 1.54912 2.44518 2.45657 2.75149 3.22988 3.30893 3.85237 4.05208 4.11863 4.34309 4.40627 4.46471 4.71076 4.76285 4.89266 4.99341 5.08433 5.23318 5.33000 5.34976 5.48587 5.66529 5.90442 6.03829 6.07447 6.38144 6.54024 6.91279 7.48399 8.99519 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.029774 B = 0.008610 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.189481 B = 3251.230546 C = 3619.159477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.132 3.868 4 C -0.240 4.240 5 C 0.105 3.895 6 F -0.142 7.142 7 C -0.183 4.183 8 C -0.057 4.057 9 C -0.102 4.102 10 C 0.079 3.921 11 H 0.012 0.988 12 C -0.117 4.117 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.918 5.918 17 Si 0.952 3.048 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.270 1.270 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.159 0.841 25 H 0.157 0.843 26 H 0.139 0.861 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.022 0.978 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 8.150 1.580 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.086 3.914 4 C -0.260 4.260 5 C 0.086 3.914 6 F -0.120 7.120 7 C -0.202 4.202 8 C -0.075 4.075 9 C -0.103 4.103 10 C 0.060 3.940 11 H 0.030 0.970 12 C -0.174 4.174 13 C -0.557 4.557 14 H 0.072 0.928 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.778 3.222 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.195 1.195 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.133 0.867 24 H 0.176 0.824 25 H 0.174 0.826 26 H 0.157 0.843 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.520 7.819 1.605 11.675 hybrid contribution 0.226 -0.174 -0.747 0.800 sum -8.295 7.646 0.858 11.313 Atomic orbital electron populations 1.23370 0.76781 1.05429 1.02283 1.86216 1.23261 1.26509 1.88398 1.18746 0.91736 0.84359 0.96529 1.21160 1.01557 0.90476 1.12770 1.17325 0.89399 0.81327 1.03330 1.91455 1.77413 1.48998 1.94155 1.21203 0.91649 1.00335 1.07018 1.20803 1.00671 0.89947 0.96092 1.20060 0.91092 0.97770 1.01366 1.17560 0.92516 0.89565 0.94335 0.96983 1.21614 0.98810 1.01220 0.95803 1.21415 1.24964 1.01348 1.08006 0.92794 1.25714 0.97768 0.95530 0.99511 1.70054 1.41457 1.07818 1.36369 0.85629 0.79035 0.77233 0.80283 1.19943 1.21053 1.19481 0.91237 0.91681 0.86706 0.82392 0.82584 0.84349 0.93004 0.94345 0.95869 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -12.73 9.26 -92.44 -0.86 -13.59 16 3 C 0.13 5.16 6.66 22.50 0.15 5.31 16 4 C -0.24 -7.73 9.02 22.41 0.20 -7.53 16 5 C 0.11 3.34 7.30 22.36 0.16 3.50 16 6 F -0.14 -4.15 17.27 44.97 0.78 -3.37 16 7 C -0.18 -5.81 10.02 22.33 0.22 -5.59 16 8 C -0.06 -2.15 8.71 22.25 0.19 -1.96 16 9 C -0.10 -4.45 4.76 -19.76 -0.09 -4.54 16 10 C 0.08 4.06 2.39 -12.29 -0.03 4.03 16 11 H 0.01 0.70 6.99 -2.38 -0.02 0.68 16 12 C -0.12 -5.70 8.69 71.98 0.63 -5.07 16 13 C -0.52 -28.60 8.21 25.60 0.21 -28.39 16 14 H 0.05 2.92 7.54 -2.91 -0.02 2.90 16 15 C 0.01 0.74 5.36 84.65 0.45 1.20 16 16 N -0.92 -53.36 11.58 21.45 0.25 -53.11 16 17 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 22 H 0.06 1.41 7.66 -2.39 -0.02 1.40 16 23 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 24 H 0.16 4.05 6.30 -2.91 -0.02 4.03 16 25 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 26 H 0.14 5.11 7.62 -2.91 -0.02 5.08 16 27 H 0.05 2.78 6.45 -2.39 -0.02 2.77 16 28 H 0.04 1.75 7.56 -2.38 -0.02 1.73 16 29 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -62.59 260.32 6.55 -56.05 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.14 Total: 5.83 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.21 Total: -37.54 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.25 Total: -53.11 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.86 Total: -13.59 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -62.59 6.55 -56.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261247566.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.185 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds