Wall clock time and date at job start Mon Mar 30 2020 03:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47168 * 2 1 4 4 C 1.50702 * 109.46972 * 119.99721 * 2 1 3 5 5 C 1.33381 * 125.20592 * 119.99860 * 4 2 1 6 6 C 1.38427 * 114.92374 * 179.97438 * 5 4 2 7 7 C 1.33387 * 114.91991 * 0.25034 * 6 5 4 8 8 C 1.50697 * 125.20287 * 179.75128 * 7 6 5 9 9 H 1.08992 * 109.47400 * 0.02562 * 8 7 6 10 10 C 1.53004 * 109.46937 * 120.00382 * 8 7 6 11 11 C 1.50700 * 109.47482 * 240.00000 * 8 7 6 12 12 H 1.08006 * 119.99861 * 359.97438 * 11 8 7 13 13 C 1.37870 * 120.00334 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00243 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 120.00235 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47312 * 59.99916 * 15 13 11 17 17 H 1.48502 * 109.47232 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46828 * 300.00047 * 15 13 11 19 19 S 1.75886 * 109.59194 * 359.63459 * 7 6 5 20 20 H 1.08994 * 109.47400 * 300.00444 * 1 2 3 21 21 H 1.09005 * 109.46635 * 60.00468 * 1 2 3 22 22 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47400 * 239.99556 * 2 1 3 24 24 H 1.08995 * 109.47045 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.46502 * 299.99606 * 3 2 1 26 26 H 1.08994 * 109.47322 * 59.99508 * 3 2 1 27 27 H 1.08002 * 122.53744 * 359.94345 * 5 4 2 28 28 H 1.08002 * 122.53759 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.47081 * 59.99758 * 10 8 7 30 30 H 1.08992 * 109.47248 * 180.02562 * 10 8 7 31 31 H 1.09003 * 109.47012 * 299.99817 * 10 8 7 32 32 H 0.96999 * 120.00910 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8024 -1.7994 1.2292 6 6 3.1403 -2.2764 2.4840 7 6 2.6404 -1.5776 3.5043 8 6 2.8563 -1.8932 4.9620 9 1 3.4840 -2.7796 5.0527 10 6 3.5452 -0.7091 5.6435 11 6 1.5265 -2.1490 5.6230 12 1 0.6158 -2.0887 5.0455 13 6 1.4722 -2.4601 6.9651 14 7 2.5809 -2.5330 7.6686 15 14 -0.1763 -2.7779 7.7843 16 1 -0.8446 -3.9269 7.1225 17 1 0.0366 -3.0887 9.2208 18 1 -1.0312 -1.5699 7.6612 19 16 1.6933 -0.2297 2.8881 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 3.1365 -2.2736 0.3182 28 1 3.7582 -3.1508 2.6261 29 1 2.9177 0.1776 5.5527 30 1 3.7018 -0.9374 6.6976 31 1 4.5071 -0.5240 5.1654 32 1 2.5428 -2.7515 8.6129 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:37 Heat of formation + Delta-G solvation = -11.185499 kcal Electronic energy + Delta-G solvation = -13139.153240 eV Core-core repulsion = 10996.756160 eV Total energy + Delta-G solvation = -2142.397080 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.09831 -36.92906 -35.34329 -32.77797 -28.71997 -27.97620 -27.26612 -24.92422 -22.49407 -21.82553 -19.79797 -18.49377 -17.15803 -16.64337 -16.09154 -15.17392 -14.88780 -14.56025 -14.44296 -14.23640 -13.64082 -13.30412 -13.03987 -12.86768 -12.77598 -12.58459 -12.32852 -12.28749 -12.03067 -11.98670 -11.90326 -11.55211 -11.30190 -11.02951 -10.51463 -9.18748 -9.10387 -8.14047 -6.29203 0.34629 0.93420 1.39690 1.40299 1.41550 1.49075 2.02899 2.41333 3.13366 3.82112 4.09487 4.31098 4.32696 4.57102 4.73207 4.81106 4.81745 4.86244 4.96241 4.99631 5.02293 5.12668 5.19637 5.33374 5.40231 5.42978 5.53587 5.59959 5.74287 5.87078 5.98070 6.26851 6.77420 7.38856 8.90232 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.038997 B = 0.007704 C = 0.007140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.840740 B = 3633.804819 C = 3920.581314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.143 4.143 4 C -0.191 4.191 5 C -0.138 4.138 6 C -0.182 4.182 7 C -0.142 4.142 8 C 0.099 3.901 9 H 0.014 0.986 10 C -0.122 4.122 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.954 3.046 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.270 1.270 19 S 0.079 5.921 20 H 0.044 0.956 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.157 0.843 28 H 0.131 0.869 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 5.369 -14.157 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.308 4.308 5 C -0.168 4.168 6 C -0.212 4.212 7 C -0.259 4.259 8 C 0.079 3.921 9 H 0.032 0.968 10 C -0.180 4.180 11 C -0.566 4.566 12 H 0.069 0.931 13 C -0.182 4.182 14 N -0.554 5.554 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.196 1.196 19 S 0.342 5.658 20 H 0.063 0.937 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.120 0.880 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.175 0.825 28 H 0.149 0.851 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.666 6.496 -13.305 15.044 hybrid contribution 0.279 -1.647 0.439 1.727 sum -2.387 4.849 -12.866 13.955 Atomic orbital electron populations 1.21896 0.93884 1.02019 1.02432 1.19767 0.96022 0.95854 0.92329 1.21885 1.01248 0.94521 1.02443 1.24864 1.06202 1.02162 0.97545 1.20161 1.01089 0.97437 0.98103 1.20259 1.05742 1.02981 0.92170 1.25088 1.01265 0.98970 1.00567 1.17335 0.95733 0.94247 0.84797 0.96768 1.21655 0.96881 0.97060 1.02397 1.21340 0.92512 1.48105 0.94656 0.93130 1.25695 0.99871 0.94818 0.97767 1.69983 1.28181 1.48932 1.08300 0.85674 0.80095 0.78876 0.77477 1.19748 1.20437 1.19561 1.83974 1.52804 1.30089 0.98919 0.93728 0.89783 0.92983 0.87956 0.92639 0.89860 0.93667 0.82528 0.85106 0.95246 0.91673 0.95443 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.12 71.98 0.66 -2.46 16 2 C -0.02 -0.44 3.30 -11.54 -0.04 -0.48 16 3 C -0.14 -2.95 9.12 71.98 0.66 -2.29 16 4 C -0.19 -6.02 5.09 24.59 0.13 -5.89 16 5 C -0.14 -4.50 10.01 21.22 0.21 -4.29 16 6 C -0.18 -7.25 10.01 21.22 0.21 -7.04 16 7 C -0.14 -6.41 5.04 24.59 0.12 -6.28 16 8 C 0.10 5.20 2.68 -12.29 -0.03 5.17 16 9 H 0.01 0.82 8.08 -2.39 -0.02 0.80 16 10 C -0.12 -6.14 8.89 71.98 0.64 -5.50 16 11 C -0.53 -29.79 8.47 25.60 0.22 -29.57 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 13 C 0.02 0.99 5.30 84.65 0.45 1.44 16 14 N -0.91 -52.97 11.32 21.44 0.24 -52.72 16 15 Si 0.95 44.07 29.54 68.60 2.03 46.09 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 S 0.08 3.06 22.58 -56.49 -1.28 1.78 16 20 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 21 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 23 H 0.10 1.93 8.08 -2.39 -0.02 1.91 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 27 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 28 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 29 H 0.03 1.42 8.00 -2.39 -0.02 1.40 16 30 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -60.90 280.90 5.29 -55.62 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.07 Total: 6.43 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 3.22 Total: -57.20 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.24 Total: -52.72 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.28 Total: 1.78 kcal Total: -60.90 5.29 -55.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.430 kcal (2) G-P(sol) polarization free energy of solvation -60.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds