Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48505 * 109.47123 * 240.00097 * 3 2 1 5 5 H 1.48507 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99854 * 3 2 1 7 7 C 1.37869 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00223 * 185.41456 * 7 2 1 9 9 C 1.50701 * 120.00172 * 5.41257 * 7 2 1 10 10 H 1.09001 * 109.46777 * 335.09136 * 9 7 2 11 11 C 1.53008 * 109.47244 * 215.09826 * 9 7 2 12 12 N 1.46896 * 109.47045 * 65.30161 * 11 9 7 13 13 C 1.50700 * 109.47268 * 95.09486 * 9 7 2 14 14 N 1.30430 * 126.45926 * 59.97393 * 13 9 7 15 15 N 1.28493 * 109.97571 * 180.16986 * 14 13 9 16 16 C 1.31541 * 109.99890 * 0.36224 * 15 14 13 17 17 N 1.35994 * 126.45801 * 239.99985 * 13 9 7 18 18 C 1.47030 * 145.33640 * 359.11007 * 17 13 9 19 19 C 1.54708 * 102.32241 * 195.46678 * 18 17 13 20 20 O 1.35726 * 141.84742 * 179.26529 * 16 15 14 21 21 H 0.97000 * 120.00206 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47033 * 185.30501 * 11 9 7 23 23 H 1.09002 * 109.46684 * 305.30584 * 11 9 7 24 24 H 1.00900 * 111.00176 * 56.05428 * 12 11 9 25 25 H 1.00903 * 110.99662 * 180.02562 * 12 11 9 26 26 H 1.09003 * 110.83300 * 313.66845 * 18 17 13 27 27 H 1.08996 * 110.83706 * 77.05577 * 18 17 13 28 28 H 1.09008 * 110.84804 * 217.16088 * 19 18 17 29 29 H 1.09005 * 110.85281 * 93.53850 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0809 -1.1961 0.0877 9 6 1.2561 -2.4962 -0.1242 10 1 0.2349 -2.3636 0.2331 11 6 1.9549 -3.5678 0.7150 12 7 1.8676 -3.2102 2.1371 13 6 1.2312 -2.9261 -1.5684 14 7 2.2670 -3.1762 -2.3205 15 7 1.8824 -3.5142 -3.4990 16 6 0.5689 -3.4910 -3.5675 17 7 0.1246 -3.1259 -2.3331 18 6 -1.3454 -3.1102 -2.3606 19 6 -1.6597 -3.8931 -3.6574 20 8 -0.4588 -3.7020 -4.4285 21 1 -0.4850 0.8400 -0.0004 22 1 1.4701 -4.5304 0.5520 23 1 3.0024 -3.6339 0.4207 24 1 0.9075 -3.0796 2.4189 25 1 2.3226 -3.9028 2.7128 26 1 -1.7549 -3.6222 -1.4898 27 1 -1.7211 -2.0888 -2.4200 28 1 -2.5217 -3.4654 -4.1696 29 1 -1.8193 -4.9500 -3.4436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280446.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = 70.349709 kcal Electronic energy + Delta-G solvation = -15668.464636 eV Core-core repulsion = 13015.602724 eV Total energy + Delta-G solvation = -2652.861912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.66044 -39.07997 -35.35284 -33.60709 -32.39878 -30.23136 -29.60564 -27.22733 -24.35021 -23.65715 -21.93806 -21.47678 -19.69417 -17.39880 -16.65808 -16.43839 -15.85644 -15.05690 -14.75700 -14.27912 -14.12261 -13.61659 -13.52641 -12.81667 -12.23774 -12.11306 -11.80160 -11.19352 -10.88735 -10.85005 -10.67561 -10.61135 -9.85470 -9.76198 -9.40990 -9.23886 -8.58273 -7.86586 -7.73218 -6.18008 -4.14822 2.49669 2.65965 3.30998 3.35191 3.36135 3.42532 3.70164 4.25477 4.40398 4.75498 4.85911 5.10810 5.15861 5.42943 5.58779 5.64569 5.82860 6.05685 6.18394 6.24264 6.67634 6.73107 7.17365 7.42273 7.68976 7.82326 7.92642 8.19552 8.22283 8.91373 9.46457 9.57910 10.91672 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.010709 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.668849 B = 2614.006467 C = 2975.639154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.467 4.467 8 H 0.067 0.933 9 C 0.110 3.890 10 H 0.074 0.926 11 C 0.086 3.914 12 N -0.828 5.828 13 C 0.275 3.725 14 N -0.294 5.294 15 N -0.279 5.279 16 C 0.291 3.709 17 N -0.524 5.524 18 C 0.082 3.918 19 C 0.046 3.954 20 O -0.271 6.271 21 H 0.262 0.738 22 H -0.006 1.006 23 H 0.070 0.930 24 H 0.335 0.665 25 H 0.325 0.675 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 -6.904 -1.097 9.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.506 4.506 8 H 0.085 0.915 9 C 0.089 3.911 10 H 0.092 0.908 11 C -0.045 4.045 12 N -0.356 5.356 13 C 0.009 3.991 14 N -0.133 5.133 15 N -0.131 5.131 16 C -0.013 4.013 17 N -0.229 5.229 18 C -0.041 4.041 19 C -0.031 4.031 20 O -0.175 6.175 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.136 0.864 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.436 -6.287 -1.913 8.529 hybrid contribution -1.798 0.318 0.366 1.863 sum -7.234 -5.970 -1.547 9.506 Atomic orbital electron populations 1.69859 1.06106 1.27109 1.50580 1.25003 0.94973 0.99725 0.94164 0.86501 0.79606 0.82085 0.79044 1.20100 1.21482 1.19711 1.20742 0.93791 0.88258 1.47780 0.91482 1.17611 0.99887 0.93995 0.79635 0.90804 1.21696 1.00814 0.93636 0.88384 1.58405 1.21703 1.52206 1.03336 1.26181 0.78149 0.96168 0.98571 1.74334 1.22660 1.20338 0.95959 1.74592 1.01200 1.22575 1.14752 1.24244 0.90935 1.04367 0.81738 1.47892 1.07961 1.54152 1.12943 1.22964 0.77996 1.03684 0.99477 1.24402 0.87431 1.01292 0.89960 1.86971 1.14158 1.89057 1.27317 0.92823 0.98827 0.91172 0.85331 0.86449 0.87738 0.87612 0.85885 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 12.77 55.43 0.71 -23.64 15 2 C 0.06 1.71 5.45 -17.82 -0.10 1.61 15 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.47 -12.57 8.03 -34.44 -0.28 -12.85 15 8 H 0.07 1.87 7.82 -52.49 -0.41 1.46 15 9 C 0.11 2.64 2.55 -92.92 -0.24 2.40 15 10 H 0.07 1.84 7.23 -51.93 -0.38 1.46 15 11 C 0.09 1.78 6.14 -3.82 -0.02 1.76 15 12 N -0.83 -15.36 9.35 -10.37 -0.10 -15.46 15 13 C 0.27 6.60 6.82 -154.60 -1.05 5.54 15 14 N -0.29 -7.49 12.19 32.87 0.40 -7.09 15 15 N -0.28 -6.85 12.23 29.75 0.36 -6.48 15 16 C 0.29 6.28 9.54 -88.46 -0.84 5.43 15 17 N -0.52 -10.98 3.84 -113.70 -0.44 -11.42 15 18 C 0.08 1.22 8.10 -2.85 -0.02 1.20 15 19 C 0.05 0.53 8.09 38.06 0.31 0.84 15 20 O -0.27 -4.76 11.17 -18.89 -0.21 -4.97 15 21 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 22 H -0.01 -0.12 8.14 -51.93 -0.42 -0.54 15 23 H 0.07 1.53 8.14 -51.93 -0.42 1.10 15 24 H 0.33 5.91 8.99 -39.29 -0.35 5.56 15 25 H 0.32 4.92 9.08 -39.29 -0.36 4.56 15 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.11 1.59 8.14 -51.93 -0.42 1.17 15 28 H 0.12 0.97 8.14 -51.92 -0.42 0.55 15 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 257.40 15.07 3.88 3.88 Total: -1.00 -32.52 257.40 -5.83 -38.35 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.17 Total: 4.27 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.25 Total: 5.94 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: 0.94 Total: -64.09 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.21 Total: -4.97 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.52 -5.83 -38.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280446.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.697 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds