Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99796 * 2 1 4 4 H 1.48505 * 109.47123 * 240.00097 * 3 2 1 5 5 H 1.48507 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47104 * 119.99854 * 3 2 1 7 7 C 1.37869 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00223 * 185.41456 * 7 2 1 9 9 C 1.50701 * 120.00172 * 5.41257 * 7 2 1 10 10 H 1.09001 * 109.46777 * 335.09136 * 9 7 2 11 11 C 1.53008 * 109.47244 * 215.09826 * 9 7 2 12 12 N 1.46896 * 109.47045 * 65.30161 * 11 9 7 13 13 C 1.50700 * 109.47268 * 95.09486 * 9 7 2 14 14 N 1.30430 * 126.45926 * 59.97393 * 13 9 7 15 15 N 1.28493 * 109.97571 * 180.16986 * 14 13 9 16 16 C 1.31541 * 109.99890 * 0.36224 * 15 14 13 17 17 N 1.35994 * 126.45801 * 239.99985 * 13 9 7 18 18 C 1.47030 * 145.33640 * 359.11007 * 17 13 9 19 19 C 1.54708 * 102.32241 * 195.46678 * 18 17 13 20 20 O 1.35726 * 141.84742 * 179.26529 * 16 15 14 21 21 H 0.97000 * 120.00206 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47033 * 185.30501 * 11 9 7 23 23 H 1.09002 * 109.46684 * 305.30584 * 11 9 7 24 24 H 1.00900 * 111.00176 * 56.05428 * 12 11 9 25 25 H 1.00903 * 110.99662 * 180.02562 * 12 11 9 26 26 H 1.09003 * 110.83300 * 313.66845 * 18 17 13 27 27 H 1.08996 * 110.83706 * 77.05577 * 18 17 13 28 28 H 1.09008 * 110.84804 * 217.16088 * 19 18 17 29 29 H 1.09005 * 110.85281 * 93.53850 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0809 -1.1961 0.0877 9 6 1.2561 -2.4962 -0.1242 10 1 0.2349 -2.3636 0.2331 11 6 1.9549 -3.5678 0.7150 12 7 1.8676 -3.2102 2.1371 13 6 1.2312 -2.9261 -1.5684 14 7 2.2670 -3.1762 -2.3205 15 7 1.8824 -3.5142 -3.4990 16 6 0.5689 -3.4910 -3.5675 17 7 0.1246 -3.1259 -2.3331 18 6 -1.3454 -3.1102 -2.3606 19 6 -1.6597 -3.8931 -3.6574 20 8 -0.4588 -3.7020 -4.4285 21 1 -0.4850 0.8400 -0.0004 22 1 1.4701 -4.5304 0.5520 23 1 3.0024 -3.6339 0.4207 24 1 0.9075 -3.0796 2.4189 25 1 2.3226 -3.9028 2.7128 26 1 -1.7549 -3.6222 -1.4898 27 1 -1.7211 -2.0888 -2.4200 28 1 -2.5217 -3.4654 -4.1696 29 1 -1.8193 -4.9500 -3.4436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280446.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = 43.525362 kcal Electronic energy + Delta-G solvation = -15669.627827 eV Core-core repulsion = 13015.602724 eV Total energy + Delta-G solvation = -2654.025103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.29610 -40.52325 -37.10990 -35.10693 -34.29709 -31.97206 -30.91141 -29.02060 -26.26864 -24.90018 -23.59135 -23.09184 -21.40051 -18.94146 -18.37116 -17.97622 -17.43285 -16.66348 -16.51594 -15.78865 -15.60685 -15.17050 -14.80544 -14.57111 -14.10626 -13.51208 -13.25956 -12.79781 -12.73584 -12.56284 -12.44990 -12.34575 -11.68677 -11.62268 -11.11938 -10.95090 -10.63047 -9.54984 -9.28382 -8.21328 -6.22596 0.90506 1.12626 1.40734 1.42905 1.49586 1.88655 1.96836 2.42771 3.08795 3.17987 3.59255 3.79121 3.87657 4.17632 4.22975 4.40587 4.46262 4.53050 4.58508 4.67287 4.95130 5.03129 5.48681 5.56332 5.75345 6.06974 6.24085 6.49587 6.83411 6.88822 7.40347 7.81618 8.86653 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.010709 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.668849 B = 2614.006467 C = 2975.639154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.025 3.975 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.482 4.482 8 H 0.047 0.953 9 C 0.118 3.882 10 H 0.063 0.937 11 C 0.097 3.903 12 N -0.836 5.836 13 C 0.258 3.742 14 N -0.324 5.324 15 N -0.321 5.321 16 C 0.304 3.696 17 N -0.527 5.527 18 C 0.069 3.931 19 C 0.051 3.949 20 O -0.277 6.277 21 H 0.263 0.737 22 H 0.011 0.989 23 H 0.053 0.947 24 H 0.341 0.659 25 H 0.345 0.655 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.170 0.830 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -7.409 -1.165 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.772 3.228 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.096 3.904 10 H 0.081 0.919 11 C -0.035 4.035 12 N -0.367 5.367 13 C -0.009 4.009 14 N -0.163 5.163 15 N -0.173 5.173 16 C -0.001 4.001 17 N -0.232 5.232 18 C -0.052 4.052 19 C -0.023 4.023 20 O -0.181 6.181 21 H 0.072 0.928 22 H 0.029 0.971 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.158 0.842 26 H 0.149 0.851 27 H 0.120 0.880 28 H 0.187 0.813 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.234 -6.808 -1.971 10.128 hybrid contribution -1.365 0.416 0.338 1.467 sum -8.599 -6.392 -1.633 10.839 Atomic orbital electron populations 1.69908 1.06495 1.27503 1.51138 1.25539 0.95794 1.01866 0.94304 0.85795 0.78729 0.79748 0.78524 1.21343 1.20480 1.19121 1.20847 0.93058 0.90051 1.48083 0.93504 1.17471 0.98979 0.93793 0.80171 0.91899 1.21465 0.99530 0.93464 0.89061 1.58296 1.22475 1.53322 1.02589 1.25920 0.79170 0.97153 0.98671 1.74226 1.24208 1.21164 0.96659 1.74408 1.03327 1.24797 1.14796 1.24302 0.91070 1.02306 0.82387 1.48081 1.09915 1.53127 1.12123 1.23483 0.74584 1.04653 1.02504 1.24944 0.86184 1.03215 0.88006 1.87002 1.14686 1.88761 1.27666 0.92764 0.97053 0.92804 0.84622 0.84160 0.85120 0.87992 0.81256 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.00 12.77 21.45 0.27 -48.73 15 2 C 0.02 1.34 5.45 84.65 0.46 1.81 15 3 Si 0.95 44.41 29.54 68.60 2.03 46.44 15 4 H -0.29 -13.94 7.11 99.48 0.71 -13.23 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.48 -26.20 8.03 25.60 0.21 -26.00 15 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 15 9 C 0.12 5.62 2.55 -12.28 -0.03 5.59 15 10 H 0.06 3.11 7.23 -2.39 -0.02 3.10 15 11 C 0.10 3.97 6.14 86.31 0.53 4.50 15 12 N -0.84 -30.19 9.35 -186.71 -1.75 -31.94 15 13 C 0.26 12.43 6.82 137.84 0.94 13.37 15 14 N -0.32 -16.78 12.19 -49.91 -0.61 -17.39 15 15 N -0.32 -15.89 12.23 -173.00 -2.12 -18.00 15 16 C 0.30 12.84 9.54 179.59 1.71 14.55 15 17 N -0.53 -21.50 3.84 -624.42 -2.40 -23.90 15 18 C 0.07 1.85 8.10 86.86 0.70 2.56 15 19 C 0.05 0.97 8.09 72.56 0.59 1.56 15 20 O -0.28 -9.00 11.17 -90.49 -1.01 -10.01 15 21 H 0.26 13.61 8.31 -92.71 -0.77 12.84 15 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 15 23 H 0.05 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.34 11.64 8.99 -89.69 -0.81 10.83 15 25 H 0.35 9.94 9.08 -89.69 -0.81 9.13 15 26 H 0.13 2.80 8.14 -2.39 -0.02 2.78 15 27 H 0.10 2.84 8.14 -2.39 -0.02 2.82 15 28 H 0.17 1.71 8.14 -2.38 -0.02 1.69 15 29 H 0.12 1.60 8.14 -2.38 -0.02 1.58 15 Total: -1.00 -71.11 257.40 -0.90 -72.00 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -0.43 Total: 13.60 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 5.11 Total: 17.93 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -6.60 Total: -139.96 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.01 Total: -10.01 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.11 -0.90 -72.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280446.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.528 kcal (2) G-P(sol) polarization free energy of solvation -71.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds