Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.09004 * 109.46802 * 305.65655 * 3 2 1 5 5 C 1.50699 * 109.47228 * 185.65212 * 3 2 1 6 6 H 1.08002 * 119.99924 * 266.63311 * 5 3 2 7 7 C 1.37870 * 119.99866 * 86.63509 * 5 3 2 8 8 N 1.31520 * 120.00407 * 353.47033 * 7 5 3 9 9 Si 1.86798 * 119.99948 * 173.47718 * 7 5 3 10 10 H 1.48499 * 109.47383 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47334 * 299.99709 * 9 7 5 12 12 H 1.48505 * 109.47261 * 59.99627 * 9 7 5 13 13 C 1.50706 * 109.46766 * 65.64986 * 3 2 1 14 14 C 1.38175 * 120.01229 * 60.00588 * 13 3 2 15 15 C 1.38433 * 120.02775 * 179.97438 * 14 13 3 16 16 F 1.35098 * 119.97155 * 179.97438 * 15 14 13 17 17 C 1.38478 * 120.05817 * 0.02562 * 15 14 13 18 18 C 1.38122 * 120.03160 * 0.02562 * 17 15 14 19 19 C 1.38681 * 120.01324 * 239.73035 * 13 3 2 20 20 O 1.35942 * 120.03380 * 359.97317 * 19 13 3 21 21 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 22 22 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 25 25 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 26 26 H 0.97006 * 119.99532 * 354.25845 * 8 7 5 27 27 H 1.07992 * 119.98743 * 359.97438 * 14 13 3 28 28 H 1.08003 * 119.98569 * 180.02562 * 17 15 14 29 29 H 1.08008 * 120.01459 * 179.97438 * 18 17 15 30 30 H 0.96700 * 114.00164 * 90.00340 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1399 6 1 4.1649 1.4699 0.7409 7 6 4.1160 1.4150 -1.3924 8 7 3.3629 1.2551 -2.4587 9 14 5.9657 1.6014 -1.5749 10 1 6.3305 1.5345 -3.0129 11 1 6.3887 2.9109 -1.0170 12 1 6.6485 0.5064 -0.8401 13 6 1.6551 2.1114 1.2945 14 6 2.1032 1.5991 2.4970 15 6 1.7502 2.2135 3.6863 16 9 2.1885 1.7114 4.8614 17 6 0.9474 3.3418 3.6725 18 6 0.4973 3.8553 2.4719 19 6 0.8558 3.2446 1.2789 20 8 0.4193 3.7531 0.0962 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4148 1.0751 -2.3602 27 1 2.7289 0.7191 2.5092 28 1 0.6731 3.8204 4.6010 29 1 -0.1292 4.7351 2.4615 30 1 -0.4281 3.3923 -0.1984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -86.745141 kcal Electronic energy + Delta-G solvation = -15437.451102 eV Core-core repulsion = 12725.564334 eV Total energy + Delta-G solvation = -2711.886768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.49901 -39.43388 -36.06037 -35.19024 -31.90559 -30.33312 -28.82080 -26.56725 -23.47705 -22.60249 -21.71866 -19.71744 -17.95344 -17.20103 -16.62157 -15.92208 -15.28754 -14.88942 -14.10482 -13.74943 -13.63351 -13.27762 -13.22348 -12.64930 -12.30759 -12.17520 -11.44348 -11.33200 -11.01328 -10.79810 -10.58279 -10.36373 -10.10294 -10.00956 -9.44692 -8.80326 -8.43657 -8.29093 -7.82252 -6.39488 -4.11603 1.52943 1.71857 3.43032 3.45653 3.63471 3.95793 4.51527 4.64819 4.69592 5.19240 5.27004 5.34851 5.64412 5.84946 5.89620 5.93695 6.12992 6.29372 6.32045 6.50800 6.58935 6.67971 6.72252 6.89540 6.99570 7.24003 7.31439 7.56589 8.09106 8.14771 8.39169 8.81283 9.58418 10.98356 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.010002 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.096589 B = 2798.822257 C = 3105.781628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C 0.061 3.939 4 H 0.055 0.945 5 C -0.589 4.589 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.905 5.905 9 Si 1.063 2.937 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.288 1.288 13 C -0.017 4.017 14 C -0.135 4.135 15 C 0.082 3.918 16 F -0.149 7.149 17 C -0.168 4.168 18 C -0.121 4.121 19 C 0.080 3.920 20 O -0.486 6.486 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.272 0.728 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 1.465 7.874 10.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.042 3.958 4 H 0.073 0.927 5 C -0.626 4.626 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.540 5.540 9 Si 0.892 3.108 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.214 1.214 13 C -0.018 4.018 14 C -0.154 4.154 15 C 0.063 3.937 16 F -0.127 7.127 17 C -0.187 4.187 18 C -0.140 4.140 19 C 0.036 3.964 20 O -0.295 6.295 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.904 1.900 6.804 8.600 hybrid contribution -1.548 -0.416 1.431 2.149 sum -6.452 1.484 8.235 10.567 Atomic orbital electron populations 1.21890 0.98604 1.00006 1.00447 1.21813 0.92415 0.99846 1.01144 1.18097 0.97238 0.91014 0.89432 0.92739 1.21853 0.89704 1.55985 0.95095 0.93089 1.25782 1.06652 0.93513 0.92047 1.70783 1.08272 1.43966 1.31028 0.83627 0.74464 0.76648 0.76111 1.20725 1.21380 1.21400 1.20710 0.91600 0.92463 0.97006 1.20960 1.02116 1.02178 0.90160 1.17763 0.99355 0.95507 0.81067 1.91438 1.88218 1.87080 1.45997 1.20715 1.01995 0.97241 0.98729 1.21122 1.01117 1.00522 0.91213 1.18391 0.98987 0.94149 0.84923 1.84906 1.41837 1.66596 1.36161 0.94005 0.93418 0.94135 0.92074 0.93553 0.91730 0.84636 0.85414 0.85385 0.76617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.73 37.15 0.36 -2.29 16 2 C -0.11 -2.43 5.13 -26.73 -0.14 -2.57 16 3 C 0.06 1.44 1.52 -92.92 -0.14 1.30 16 4 H 0.05 1.39 5.93 -51.93 -0.31 1.09 16 5 C -0.59 -15.98 8.10 -34.44 -0.28 -16.26 16 6 H 0.05 1.40 7.43 -52.49 -0.39 1.01 16 7 C 0.03 0.70 5.45 -17.82 -0.10 0.60 16 8 N -0.91 -26.43 13.55 55.43 0.75 -25.68 16 9 Si 1.06 24.99 29.91 -169.99 -5.08 19.91 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 C -0.02 -0.36 3.80 -104.48 -0.40 -0.75 16 14 C -0.14 -2.69 8.47 -39.53 -0.33 -3.02 16 15 C 0.08 1.47 7.30 -39.42 -0.29 1.18 16 16 F -0.15 -2.59 17.27 2.25 0.04 -2.55 16 17 C -0.17 -2.65 10.02 -39.54 -0.40 -3.05 16 18 C -0.12 -1.95 9.98 -39.44 -0.39 -2.34 16 19 C 0.08 1.52 6.68 -39.24 -0.26 1.26 16 20 O -0.49 -8.89 12.27 -19.56 -0.24 -9.13 16 21 H 0.04 0.69 7.40 -51.93 -0.38 0.31 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 1.43 7.63 -51.93 -0.40 1.03 16 25 H 0.05 0.97 7.21 -51.93 -0.37 0.59 16 26 H 0.27 7.78 6.31 -40.82 -0.26 7.52 16 27 H 0.14 2.73 7.54 -52.49 -0.40 2.33 16 28 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.38 5.04 9.06 45.56 0.41 5.45 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -29.98 261.41 -5.54 -35.52 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.58 Total: 3.94 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -2.36 Total: -25.96 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.75 Total: -25.68 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.24 Total: -9.13 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.98 -5.54 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.223 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds