Wall clock time and date at job start Mon Mar 30 2020 02:40:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53007 * 109.47252 * 2 1
4 4 H 1.09004 * 109.46802 * 305.65655 * 3 2 1
5 5 C 1.50699 * 109.47228 * 185.65212 * 3 2 1
6 6 H 1.08002 * 119.99924 * 266.63311 * 5 3 2
7 7 C 1.37870 * 119.99866 * 86.63509 * 5 3 2
8 8 N 1.31520 * 120.00407 * 353.47033 * 7 5 3
9 9 Si 1.86798 * 119.99948 * 173.47718 * 7 5 3
10 10 H 1.48499 * 109.47383 * 179.97438 * 9 7 5
11 11 H 1.48496 * 109.47334 * 299.99709 * 9 7 5
12 12 H 1.48505 * 109.47261 * 59.99627 * 9 7 5
13 13 C 1.50706 * 109.46766 * 65.64986 * 3 2 1
14 14 C 1.38175 * 120.01229 * 60.00588 * 13 3 2
15 15 C 1.38433 * 120.02775 * 179.97438 * 14 13 3
16 16 F 1.35098 * 119.97155 * 179.97438 * 15 14 13
17 17 C 1.38478 * 120.05817 * 0.02562 * 15 14 13
18 18 C 1.38122 * 120.03160 * 0.02562 * 17 15 14
19 19 C 1.38681 * 120.01324 * 239.73035 * 13 3 2
20 20 O 1.35942 * 120.03380 * 359.97317 * 19 13 3
21 21 H 1.09006 * 109.47209 * 299.99774 * 1 2 3
22 22 H 1.08999 * 109.47331 * 59.99976 * 1 2 3
23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3
24 24 H 1.09006 * 109.47209 * 240.00226 * 2 1 3
25 25 H 1.08999 * 109.47331 * 120.00024 * 2 1 3
26 26 H 0.97006 * 119.99532 * 354.25845 * 8 7 5
27 27 H 1.07992 * 119.98743 * 359.97438 * 14 13 3
28 28 H 1.08003 * 119.98569 * 180.02562 * 17 15 14
29 29 H 1.08008 * 120.01459 * 179.97438 * 18 17 15
30 30 H 0.96700 * 114.00164 * 90.00340 * 20 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5963 1.9848 -0.8350
5 6 3.5405 1.4448 -0.1399
6 1 4.1649 1.4699 0.7409
7 6 4.1160 1.4150 -1.3924
8 7 3.3629 1.2551 -2.4587
9 14 5.9657 1.6014 -1.5749
10 1 6.3305 1.5345 -3.0129
11 1 6.3887 2.9109 -1.0170
12 1 6.6485 0.5064 -0.8401
13 6 1.6551 2.1114 1.2945
14 6 2.1032 1.5991 2.4970
15 6 1.7502 2.2135 3.6863
16 9 2.1885 1.7114 4.8614
17 6 0.9474 3.3418 3.6725
18 6 0.4973 3.8553 2.4719
19 6 0.8558 3.2446 1.2789
20 8 0.4193 3.7531 0.0962
21 1 -0.3634 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.4148 1.0751 -2.3602
27 1 2.7289 0.7191 2.5092
28 1 0.6731 3.8204 4.6010
29 1 -0.1292 4.7351 2.4615
30 1 -0.4281 3.3923 -0.1984
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261280678.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:22
Heat of formation + Delta-G solvation = -86.745141 kcal
Electronic energy + Delta-G solvation = -15437.451102 eV
Core-core repulsion = 12725.564334 eV
Total energy + Delta-G solvation = -2711.886768 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-48.49901 -39.43388 -36.06037 -35.19024 -31.90559 -30.33312 -28.82080 -26.56725
-23.47705 -22.60249 -21.71866 -19.71744 -17.95344 -17.20103 -16.62157 -15.92208
-15.28754 -14.88942 -14.10482 -13.74943 -13.63351 -13.27762 -13.22348 -12.64930
-12.30759 -12.17520 -11.44348 -11.33200 -11.01328 -10.79810 -10.58279 -10.36373
-10.10294 -10.00956 -9.44692 -8.80326 -8.43657 -8.29093 -7.82252 -6.39488
-4.11603 1.52943 1.71857 3.43032 3.45653 3.63471 3.95793 4.51527
4.64819 4.69592 5.19240 5.27004 5.34851 5.64412 5.84946 5.89620
5.93695 6.12992 6.29372 6.32045 6.50800 6.58935 6.67971 6.72252
6.89540 6.99570 7.24003 7.31439 7.56589 8.09106 8.14771 8.39169
8.81283 9.58418 10.98356
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.024815 B = 0.010002 C = 0.009013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1128.096589 B = 2798.822257 C = 3105.781628
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.114 4.114
3 C 0.061 3.939
4 H 0.055 0.945
5 C -0.589 4.589
6 H 0.051 0.949
7 C 0.025 3.975
8 N -0.905 5.905
9 Si 1.063 2.937
10 H -0.282 1.282
11 H -0.287 1.287
12 H -0.288 1.288
13 C -0.017 4.017
14 C -0.135 4.135
15 C 0.082 3.918
16 F -0.149 7.149
17 C -0.168 4.168
18 C -0.121 4.121
19 C 0.080 3.920
20 O -0.486 6.486
21 H 0.041 0.959
22 H 0.047 0.953
23 H 0.040 0.960
24 H 0.061 0.939
25 H 0.046 0.954
26 H 0.272 0.728
27 H 0.136 0.864
28 H 0.128 0.872
29 H 0.128 0.872
30 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.663 1.465 7.874 10.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.152 4.152
3 C 0.042 3.958
4 H 0.073 0.927
5 C -0.626 4.626
6 H 0.069 0.931
7 C -0.180 4.180
8 N -0.540 5.540
9 Si 0.892 3.108
10 H -0.207 1.207
11 H -0.214 1.214
12 H -0.214 1.214
13 C -0.018 4.018
14 C -0.154 4.154
15 C 0.063 3.937
16 F -0.127 7.127
17 C -0.187 4.187
18 C -0.140 4.140
19 C 0.036 3.964
20 O -0.295 6.295
21 H 0.060 0.940
22 H 0.066 0.934
23 H 0.059 0.941
24 H 0.079 0.921
25 H 0.064 0.936
26 H 0.083 0.917
27 H 0.154 0.846
28 H 0.146 0.854
29 H 0.146 0.854
30 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges -4.904 1.900 6.804 8.600
hybrid contribution -1.548 -0.416 1.431 2.149
sum -6.452 1.484 8.235 10.567
Atomic orbital electron populations
1.21890 0.98604 1.00006 1.00447 1.21813 0.92415 0.99846 1.01144
1.18097 0.97238 0.91014 0.89432 0.92739 1.21853 0.89704 1.55985
0.95095 0.93089 1.25782 1.06652 0.93513 0.92047 1.70783 1.08272
1.43966 1.31028 0.83627 0.74464 0.76648 0.76111 1.20725 1.21380
1.21400 1.20710 0.91600 0.92463 0.97006 1.20960 1.02116 1.02178
0.90160 1.17763 0.99355 0.95507 0.81067 1.91438 1.88218 1.87080
1.45997 1.20715 1.01995 0.97241 0.98729 1.21122 1.01117 1.00522
0.91213 1.18391 0.98987 0.94149 0.84923 1.84906 1.41837 1.66596
1.36161 0.94005 0.93418 0.94135 0.92074 0.93553 0.91730 0.84636
0.85414 0.85385 0.76617
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.66 9.73 37.15 0.36 -2.29 16
2 C -0.11 -2.43 5.13 -26.73 -0.14 -2.57 16
3 C 0.06 1.44 1.52 -92.92 -0.14 1.30 16
4 H 0.05 1.39 5.93 -51.93 -0.31 1.09 16
5 C -0.59 -15.98 8.10 -34.44 -0.28 -16.26 16
6 H 0.05 1.40 7.43 -52.49 -0.39 1.01 16
7 C 0.03 0.70 5.45 -17.82 -0.10 0.60 16
8 N -0.91 -26.43 13.55 55.43 0.75 -25.68 16
9 Si 1.06 24.99 29.91 -169.99 -5.08 19.91 16
10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16
13 C -0.02 -0.36 3.80 -104.48 -0.40 -0.75 16
14 C -0.14 -2.69 8.47 -39.53 -0.33 -3.02 16
15 C 0.08 1.47 7.30 -39.42 -0.29 1.18 16
16 F -0.15 -2.59 17.27 2.25 0.04 -2.55 16
17 C -0.17 -2.65 10.02 -39.54 -0.40 -3.05 16
18 C -0.12 -1.95 9.98 -39.44 -0.39 -2.34 16
19 C 0.08 1.52 6.68 -39.24 -0.26 1.26 16
20 O -0.49 -8.89 12.27 -19.56 -0.24 -9.13 16
21 H 0.04 0.69 7.40 -51.93 -0.38 0.31 16
22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.06 1.43 7.63 -51.93 -0.40 1.03 16
25 H 0.05 0.97 7.21 -51.93 -0.37 0.59 16
26 H 0.27 7.78 6.31 -40.82 -0.26 7.52 16
27 H 0.14 2.73 7.54 -52.49 -0.40 2.33 16
28 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16
29 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16
30 H 0.38 5.04 9.06 45.56 0.41 5.45 16
LS Contribution 261.41 15.07 3.94 3.94
Total: -1.00 -29.98 261.41 -5.54 -35.52
By element:
Atomic # 1 Polarization: 6.52 SS G_CDS: -2.58 Total: 3.94 kcal
Atomic # 6 Polarization: -23.59 SS G_CDS: -2.36 Total: -25.96 kcal
Atomic # 7 Polarization: -26.43 SS G_CDS: 0.75 Total: -25.68 kcal
Atomic # 8 Polarization: -8.89 SS G_CDS: -0.24 Total: -9.13 kcal
Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal
Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -29.98 -5.54 -35.52 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261280678.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.223 kcal
(2) G-P(sol) polarization free energy of solvation -29.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.745 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds