Wall clock time and date at job start Mon Mar 30 2020 02:40:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53007 * 109.47252 * 2 1
4 4 H 1.09004 * 109.46802 * 305.65655 * 3 2 1
5 5 C 1.50699 * 109.47228 * 185.65212 * 3 2 1
6 6 H 1.08002 * 119.99924 * 266.63311 * 5 3 2
7 7 C 1.37870 * 119.99866 * 86.63509 * 5 3 2
8 8 N 1.31520 * 120.00407 * 353.47033 * 7 5 3
9 9 Si 1.86798 * 119.99948 * 173.47718 * 7 5 3
10 10 H 1.48499 * 109.47383 * 179.97438 * 9 7 5
11 11 H 1.48496 * 109.47334 * 299.99709 * 9 7 5
12 12 H 1.48505 * 109.47261 * 59.99627 * 9 7 5
13 13 C 1.50706 * 109.46766 * 65.64986 * 3 2 1
14 14 C 1.38175 * 120.01229 * 60.00588 * 13 3 2
15 15 C 1.38433 * 120.02775 * 179.97438 * 14 13 3
16 16 F 1.35098 * 119.97155 * 179.97438 * 15 14 13
17 17 C 1.38478 * 120.05817 * 0.02562 * 15 14 13
18 18 C 1.38122 * 120.03160 * 0.02562 * 17 15 14
19 19 C 1.38681 * 120.01324 * 239.73035 * 13 3 2
20 20 O 1.35942 * 120.03380 * 359.97317 * 19 13 3
21 21 H 1.09006 * 109.47209 * 299.99774 * 1 2 3
22 22 H 1.08999 * 109.47331 * 59.99976 * 1 2 3
23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3
24 24 H 1.09006 * 109.47209 * 240.00226 * 2 1 3
25 25 H 1.08999 * 109.47331 * 120.00024 * 2 1 3
26 26 H 0.97006 * 119.99532 * 354.25845 * 8 7 5
27 27 H 1.07992 * 119.98743 * 359.97438 * 14 13 3
28 28 H 1.08003 * 119.98569 * 180.02562 * 17 15 14
29 29 H 1.08008 * 120.01459 * 179.97438 * 18 17 15
30 30 H 0.96700 * 114.00164 * 90.00340 * 20 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5963 1.9848 -0.8350
5 6 3.5405 1.4448 -0.1399
6 1 4.1649 1.4699 0.7409
7 6 4.1160 1.4150 -1.3924
8 7 3.3629 1.2551 -2.4587
9 14 5.9657 1.6014 -1.5749
10 1 6.3305 1.5345 -3.0129
11 1 6.3887 2.9109 -1.0170
12 1 6.6485 0.5064 -0.8401
13 6 1.6551 2.1114 1.2945
14 6 2.1032 1.5991 2.4970
15 6 1.7502 2.2135 3.6863
16 9 2.1885 1.7114 4.8614
17 6 0.9474 3.3418 3.6725
18 6 0.4973 3.8553 2.4719
19 6 0.8558 3.2446 1.2789
20 8 0.4193 3.7531 0.0962
21 1 -0.3634 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.4148 1.0751 -2.3602
27 1 2.7289 0.7191 2.5092
28 1 0.6731 3.8204 4.6010
29 1 -0.1292 4.7351 2.4615
30 1 -0.4281 3.3923 -0.1984
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261280678.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:40:22
Heat of formation + Delta-G solvation = -105.449924 kcal
Electronic energy + Delta-G solvation = -15438.262202 eV
Core-core repulsion = 12725.564334 eV
Total energy + Delta-G solvation = -2712.697869 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-49.87597 -40.89069 -37.53298 -36.87060 -33.84969 -31.79049 -30.25641 -28.32922
-25.36237 -24.10397 -23.16271 -21.41258 -19.35471 -19.04758 -18.15851 -17.42494
-16.68285 -16.27829 -15.76541 -15.66018 -15.06936 -14.85258 -14.69713 -14.19954
-13.95783 -13.76430 -12.97675 -12.78380 -12.66272 -12.50297 -12.32359 -12.01324
-11.92792 -11.67223 -11.07359 -10.68342 -10.48486 -9.81199 -9.30135 -8.57738
-6.29538 0.12678 0.32097 1.51466 1.58064 1.77381 2.51440 2.60930
3.20598 3.29340 3.35513 3.87176 3.90003 4.19456 4.37213 4.42435
4.46297 4.58768 4.84561 4.98380 5.04859 5.12587 5.14976 5.19824
5.25431 5.41997 5.52835 5.75540 5.88523 6.11235 6.25109 6.66208
6.88224 7.46825 8.80544
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.024815 B = 0.010002 C = 0.009013
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1128.096589 B = 2798.822257 C = 3105.781628
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.107 4.107
3 C 0.063 3.937
4 H 0.030 0.970
5 C -0.600 4.600
6 H 0.040 0.960
7 C -0.025 4.025
8 N -0.933 5.933
9 Si 1.104 2.896
10 H -0.283 1.283
11 H -0.278 1.278
12 H -0.272 1.272
13 C -0.047 4.047
14 C -0.149 4.149
15 C 0.076 3.924
16 F -0.147 7.147
17 C -0.148 4.148
18 C -0.108 4.108
19 C 0.073 3.927
20 O -0.503 6.503
21 H 0.053 0.947
22 H 0.050 0.950
23 H 0.060 0.940
24 H 0.030 0.970
25 H 0.043 0.957
26 H 0.263 0.737
27 H 0.119 0.881
28 H 0.168 0.832
29 H 0.166 0.834
30 H 0.399 0.601
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.640 2.615 9.615 12.556
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.145 4.145
3 C 0.044 3.956
4 H 0.048 0.952
5 C -0.637 4.637
6 H 0.058 0.942
7 C -0.224 4.224
8 N -0.569 5.569
9 Si 0.927 3.073
10 H -0.208 1.208
11 H -0.203 1.203
12 H -0.197 1.197
13 C -0.047 4.047
14 C -0.168 4.168
15 C 0.057 3.943
16 F -0.125 7.125
17 C -0.166 4.166
18 C -0.126 4.126
19 C 0.028 3.972
20 O -0.314 6.314
21 H 0.072 0.928
22 H 0.069 0.931
23 H 0.079 0.921
24 H 0.049 0.951
25 H 0.062 0.938
26 H 0.073 0.927
27 H 0.137 0.863
28 H 0.186 0.814
29 H 0.184 0.816
30 H 0.257 0.743
Dipole moment (debyes) X Y Z Total
from point charges -5.904 3.040 8.562 10.835
hybrid contribution -1.310 -0.747 0.974 1.795
sum -7.214 2.293 9.536 12.175
Atomic orbital electron populations
1.21757 0.95256 1.01591 1.01169 1.21620 0.95410 0.98054 0.99448
1.17904 0.95125 0.92154 0.90412 0.95221 1.22225 0.92047 1.54927
0.94545 0.94212 1.27013 1.10041 0.93190 0.92150 1.70877 1.08052
1.46393 1.31624 0.83100 0.70545 0.77504 0.76190 1.20790 1.20343
1.19693 1.20479 0.94265 0.94153 0.95850 1.20847 1.02706 1.02278
0.91003 1.17826 0.99879 0.96206 0.80365 1.91444 1.88296 1.87211
1.45588 1.21148 0.99553 0.95599 1.00311 1.21452 1.00468 1.00896
0.89808 1.18588 0.98867 0.93548 0.86156 1.84841 1.43429 1.66722
1.36419 0.92795 0.93101 0.92096 0.95083 0.93781 0.92702 0.86284
0.81437 0.81625 0.74314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.80 9.73 71.98 0.70 -4.10 16
2 C -0.11 -4.70 5.13 30.59 0.16 -4.54 16
3 C 0.06 3.05 1.52 -12.28 -0.02 3.03 16
4 H 0.03 1.57 5.93 -2.38 -0.01 1.56 16
5 C -0.60 -33.54 8.10 25.60 0.21 -33.34 16
6 H 0.04 2.25 7.43 -2.91 -0.02 2.22 16
7 C -0.02 -1.42 5.45 84.65 0.46 -0.96 16
8 N -0.93 -56.17 13.55 21.45 0.29 -55.88 16
9 Si 1.10 51.06 29.91 68.60 2.05 53.11 16
10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16
11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16
13 C -0.05 -1.95 3.80 -19.77 -0.08 -2.03 16
14 C -0.15 -5.90 8.47 22.30 0.19 -5.71 16
15 C 0.08 2.56 7.30 22.37 0.16 2.72 16
16 F -0.15 -4.79 17.27 44.97 0.78 -4.02 16
17 C -0.15 -4.03 10.02 22.30 0.22 -3.81 16
18 C -0.11 -3.03 9.98 22.36 0.22 -2.81 16
19 C 0.07 2.64 6.68 22.49 0.15 2.79 16
20 O -0.50 -17.72 12.27 -92.89 -1.14 -18.85 16
21 H 0.05 1.71 7.40 -2.38 -0.02 1.69 16
22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16
24 H 0.03 1.50 7.63 -2.38 -0.02 1.48 16
25 H 0.04 1.89 7.21 -2.39 -0.02 1.88 16
26 H 0.26 15.73 6.31 -92.70 -0.59 15.14 16
27 H 0.12 4.95 7.54 -2.91 -0.02 4.92 16
28 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16
29 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16
30 H 0.40 10.05 9.06 -74.06 -0.67 9.38 16
Total: -1.00 -65.89 261.41 5.03 -60.86
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: 0.67 Total: 13.53 kcal
Atomic # 6 Polarization: -51.13 SS G_CDS: 2.38 Total: -48.75 kcal
Atomic # 7 Polarization: -56.17 SS G_CDS: 0.29 Total: -55.88 kcal
Atomic # 8 Polarization: -17.72 SS G_CDS: -1.14 Total: -18.85 kcal
Atomic # 9 Polarization: -4.79 SS G_CDS: 0.78 Total: -4.02 kcal
Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal
Total: -65.89 5.03 -60.86 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261280678.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.589 kcal
(2) G-P(sol) polarization free energy of solvation -65.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds