Wall clock time and date at job start Mon Mar 30 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 H 1.09004 * 109.46802 * 305.65655 * 3 2 1 5 5 C 1.50699 * 109.47228 * 185.65212 * 3 2 1 6 6 H 1.08002 * 119.99924 * 266.63311 * 5 3 2 7 7 C 1.37870 * 119.99866 * 86.63509 * 5 3 2 8 8 N 1.31520 * 120.00407 * 353.47033 * 7 5 3 9 9 Si 1.86798 * 119.99948 * 173.47718 * 7 5 3 10 10 H 1.48499 * 109.47383 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47334 * 299.99709 * 9 7 5 12 12 H 1.48505 * 109.47261 * 59.99627 * 9 7 5 13 13 C 1.50706 * 109.46766 * 65.64986 * 3 2 1 14 14 C 1.38175 * 120.01229 * 60.00588 * 13 3 2 15 15 C 1.38433 * 120.02775 * 179.97438 * 14 13 3 16 16 F 1.35098 * 119.97155 * 179.97438 * 15 14 13 17 17 C 1.38478 * 120.05817 * 0.02562 * 15 14 13 18 18 C 1.38122 * 120.03160 * 0.02562 * 17 15 14 19 19 C 1.38681 * 120.01324 * 239.73035 * 13 3 2 20 20 O 1.35942 * 120.03380 * 359.97317 * 19 13 3 21 21 H 1.09006 * 109.47209 * 299.99774 * 1 2 3 22 22 H 1.08999 * 109.47331 * 59.99976 * 1 2 3 23 23 H 1.08999 * 109.47177 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47209 * 240.00226 * 2 1 3 25 25 H 1.08999 * 109.47331 * 120.00024 * 2 1 3 26 26 H 0.97006 * 119.99532 * 354.25845 * 8 7 5 27 27 H 1.07992 * 119.98743 * 359.97438 * 14 13 3 28 28 H 1.08003 * 119.98569 * 180.02562 * 17 15 14 29 29 H 1.08008 * 120.01459 * 179.97438 * 18 17 15 30 30 H 0.96700 * 114.00164 * 90.00340 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9848 -0.8350 5 6 3.5405 1.4448 -0.1399 6 1 4.1649 1.4699 0.7409 7 6 4.1160 1.4150 -1.3924 8 7 3.3629 1.2551 -2.4587 9 14 5.9657 1.6014 -1.5749 10 1 6.3305 1.5345 -3.0129 11 1 6.3887 2.9109 -1.0170 12 1 6.6485 0.5064 -0.8401 13 6 1.6551 2.1114 1.2945 14 6 2.1032 1.5991 2.4970 15 6 1.7502 2.2135 3.6863 16 9 2.1885 1.7114 4.8614 17 6 0.9474 3.3418 3.6725 18 6 0.4973 3.8553 2.4719 19 6 0.8558 3.2446 1.2789 20 8 0.4193 3.7531 0.0962 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.4148 1.0751 -2.3602 27 1 2.7289 0.7191 2.5092 28 1 0.6731 3.8204 4.6010 29 1 -0.1292 4.7351 2.4615 30 1 -0.4281 3.3923 -0.1984 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280678.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:22 Heat of formation + Delta-G solvation = -105.449924 kcal Electronic energy + Delta-G solvation = -15438.262202 eV Core-core repulsion = 12725.564334 eV Total energy + Delta-G solvation = -2712.697869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.87597 -40.89069 -37.53298 -36.87060 -33.84969 -31.79049 -30.25641 -28.32922 -25.36237 -24.10397 -23.16271 -21.41258 -19.35471 -19.04758 -18.15851 -17.42494 -16.68285 -16.27829 -15.76541 -15.66018 -15.06936 -14.85258 -14.69713 -14.19954 -13.95783 -13.76430 -12.97675 -12.78380 -12.66272 -12.50297 -12.32359 -12.01324 -11.92792 -11.67223 -11.07359 -10.68342 -10.48486 -9.81199 -9.30135 -8.57738 -6.29538 0.12678 0.32097 1.51466 1.58064 1.77381 2.51440 2.60930 3.20598 3.29340 3.35513 3.87176 3.90003 4.19456 4.37213 4.42435 4.46297 4.58768 4.84561 4.98380 5.04859 5.12587 5.14976 5.19824 5.25431 5.41997 5.52835 5.75540 5.88523 6.11235 6.25109 6.66208 6.88224 7.46825 8.80544 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.024815 B = 0.010002 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.096589 B = 2798.822257 C = 3105.781628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.063 3.937 4 H 0.030 0.970 5 C -0.600 4.600 6 H 0.040 0.960 7 C -0.025 4.025 8 N -0.933 5.933 9 Si 1.104 2.896 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.272 1.272 13 C -0.047 4.047 14 C -0.149 4.149 15 C 0.076 3.924 16 F -0.147 7.147 17 C -0.148 4.148 18 C -0.108 4.108 19 C 0.073 3.927 20 O -0.503 6.503 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.263 0.737 27 H 0.119 0.881 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 2.615 9.615 12.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.044 3.956 4 H 0.048 0.952 5 C -0.637 4.637 6 H 0.058 0.942 7 C -0.224 4.224 8 N -0.569 5.569 9 Si 0.927 3.073 10 H -0.208 1.208 11 H -0.203 1.203 12 H -0.197 1.197 13 C -0.047 4.047 14 C -0.168 4.168 15 C 0.057 3.943 16 F -0.125 7.125 17 C -0.166 4.166 18 C -0.126 4.126 19 C 0.028 3.972 20 O -0.314 6.314 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.186 0.814 29 H 0.184 0.816 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.904 3.040 8.562 10.835 hybrid contribution -1.310 -0.747 0.974 1.795 sum -7.214 2.293 9.536 12.175 Atomic orbital electron populations 1.21757 0.95256 1.01591 1.01169 1.21620 0.95410 0.98054 0.99448 1.17904 0.95125 0.92154 0.90412 0.95221 1.22225 0.92047 1.54927 0.94545 0.94212 1.27013 1.10041 0.93190 0.92150 1.70877 1.08052 1.46393 1.31624 0.83100 0.70545 0.77504 0.76190 1.20790 1.20343 1.19693 1.20479 0.94265 0.94153 0.95850 1.20847 1.02706 1.02278 0.91003 1.17826 0.99879 0.96206 0.80365 1.91444 1.88296 1.87211 1.45588 1.21148 0.99553 0.95599 1.00311 1.21452 1.00468 1.00896 0.89808 1.18588 0.98867 0.93548 0.86156 1.84841 1.43429 1.66722 1.36419 0.92795 0.93101 0.92096 0.95083 0.93781 0.92702 0.86284 0.81437 0.81625 0.74314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.73 71.98 0.70 -4.10 16 2 C -0.11 -4.70 5.13 30.59 0.16 -4.54 16 3 C 0.06 3.05 1.52 -12.28 -0.02 3.03 16 4 H 0.03 1.57 5.93 -2.38 -0.01 1.56 16 5 C -0.60 -33.54 8.10 25.60 0.21 -33.34 16 6 H 0.04 2.25 7.43 -2.91 -0.02 2.22 16 7 C -0.02 -1.42 5.45 84.65 0.46 -0.96 16 8 N -0.93 -56.17 13.55 21.45 0.29 -55.88 16 9 Si 1.10 51.06 29.91 68.60 2.05 53.11 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C -0.05 -1.95 3.80 -19.77 -0.08 -2.03 16 14 C -0.15 -5.90 8.47 22.30 0.19 -5.71 16 15 C 0.08 2.56 7.30 22.37 0.16 2.72 16 16 F -0.15 -4.79 17.27 44.97 0.78 -4.02 16 17 C -0.15 -4.03 10.02 22.30 0.22 -3.81 16 18 C -0.11 -3.03 9.98 22.36 0.22 -2.81 16 19 C 0.07 2.64 6.68 22.49 0.15 2.79 16 20 O -0.50 -17.72 12.27 -92.89 -1.14 -18.85 16 21 H 0.05 1.71 7.40 -2.38 -0.02 1.69 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.03 1.50 7.63 -2.38 -0.02 1.48 16 25 H 0.04 1.89 7.21 -2.39 -0.02 1.88 16 26 H 0.26 15.73 6.31 -92.70 -0.59 15.14 16 27 H 0.12 4.95 7.54 -2.91 -0.02 4.92 16 28 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.40 10.05 9.06 -74.06 -0.67 9.38 16 Total: -1.00 -65.89 261.41 5.03 -60.86 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.67 Total: 13.53 kcal Atomic # 6 Polarization: -51.13 SS G_CDS: 2.38 Total: -48.75 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.29 Total: -55.88 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.14 Total: -18.85 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.78 Total: -4.02 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -65.89 5.03 -60.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280678.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.589 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds