Wall clock time and date at job start Mon Mar 30 2020 03:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33389 * 125.20714 * 239.72079 * 4 2 1 6 6 C 1.38421 * 114.92221 * 179.85796 * 5 4 2 7 7 C 1.50697 * 122.53856 * 180.20138 * 6 5 4 8 8 H 1.09000 * 109.47315 * 0.21862 * 7 6 5 9 9 C 1.52993 * 109.47313 * 120.22280 * 7 6 5 10 10 C 1.50703 * 109.46978 * 240.22232 * 7 6 5 11 11 H 1.08001 * 120.00163 * 359.97438 * 10 7 6 12 12 C 1.37882 * 119.99923 * 180.02562 * 10 7 6 13 13 N 1.31512 * 119.99906 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 119.99988 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46913 * 119.99759 * 14 12 10 17 17 H 1.48496 * 109.46803 * 240.00085 * 14 12 10 18 18 C 1.33388 * 114.92248 * 0.43107 * 6 5 4 19 19 S 1.75887 * 109.59301 * 359.77045 * 18 6 5 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.08000 * 122.53310 * 0.02562 * 5 4 2 28 28 H 1.08998 * 109.47310 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47366 * 300.00201 * 9 7 6 30 30 H 1.09000 * 109.47272 * 59.99555 * 9 7 6 31 31 H 0.97002 * 120.00205 * 180.02562 * 13 12 10 32 32 H 1.07999 * 125.20388 * 179.79343 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8069 -1.7965 -1.2289 6 6 3.1409 -2.2763 -2.4836 7 6 4.0038 -3.4958 -2.6817 8 1 4.2899 -3.9001 -1.7107 9 6 3.2214 -4.5526 -3.4638 10 6 5.2420 -3.1153 -3.4519 11 1 5.3891 -2.0928 -3.7669 12 6 6.1865 -4.0728 -3.7555 13 7 6.0071 -5.3181 -3.3724 14 14 7.7210 -3.6013 -4.7109 15 1 7.6838 -2.1498 -5.0220 16 1 8.9243 -3.9024 -3.8945 17 1 7.7742 -4.3771 -5.9760 18 6 2.6452 -1.5748 -3.5040 19 16 1.6934 -0.2300 -2.8881 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 3.1453 -2.2673 -0.3178 28 1 3.8454 -5.4349 -3.6067 29 1 2.3258 -4.8279 -2.9067 30 1 2.9353 -4.1483 -4.4347 31 1 6.6717 -5.9917 -3.5856 32 1 2.8036 -1.7985 -4.5486 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:48 Heat of formation + Delta-G solvation = 4.264330 kcal Electronic energy + Delta-G solvation = -13150.942709 eV Core-core repulsion = 11009.215584 eV Total energy + Delta-G solvation = -2141.727126 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.01230 -35.49932 -33.20897 -30.31316 -27.43873 -27.08627 -25.10814 -23.75128 -21.45647 -19.75074 -17.92068 -16.40240 -15.98445 -14.97361 -14.56946 -13.87418 -13.45974 -13.27670 -12.71507 -12.33725 -12.11367 -11.84685 -11.77359 -11.36651 -11.08938 -11.06264 -10.96028 -10.88647 -10.63158 -10.27324 -10.21128 -10.01860 -9.36090 -8.94004 -8.35814 -7.89957 -7.45133 -5.99363 -4.05386 1.75149 2.33046 2.72997 3.29579 3.37537 3.41954 3.66138 4.45142 4.88449 5.04874 5.25733 5.31653 5.61130 5.64834 5.86240 5.90973 6.01331 6.03808 6.26316 6.30905 6.34870 6.46307 6.83235 6.89591 7.04632 7.13687 7.32690 7.43117 7.74493 7.99738 8.11654 8.43096 8.97605 9.58974 11.06422 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.042161 B = 0.006997 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.967316 B = 4000.765764 C = 4115.861175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.021 4.021 3 C -0.145 4.145 4 C -0.183 4.183 5 C -0.122 4.122 6 C -0.057 4.057 7 C 0.091 3.909 8 H 0.034 0.966 9 C -0.130 4.130 10 C -0.504 4.504 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.207 4.207 19 S 0.026 5.974 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.008 0.992 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 8.962 4.719 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.299 4.299 5 C -0.153 4.153 6 C -0.068 4.068 7 C 0.070 3.930 8 H 0.052 0.948 9 C -0.188 4.188 10 C -0.542 4.542 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.341 4.341 19 S 0.289 5.711 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.103 0.897 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.475 9.970 4.013 14.327 hybrid contribution 1.770 -0.993 -0.001 2.030 sum -7.705 8.977 4.012 12.492 Atomic orbital electron populations 1.21881 0.94614 1.02109 1.01550 1.19613 0.95400 0.95380 0.93763 1.21885 1.01619 0.95186 1.01522 1.24213 1.07036 1.02003 0.96666 1.20196 0.99602 0.96581 0.98928 1.19597 0.97113 0.99378 0.90703 1.17630 0.91237 0.87140 0.97027 0.94828 1.21774 0.97213 1.02114 0.97690 1.21204 1.03206 0.95008 1.34787 0.92463 1.24966 0.98135 0.94982 0.95978 1.69896 1.35103 1.01242 1.46778 0.86538 0.83154 0.78648 0.79731 1.19782 1.21016 1.21025 1.25202 1.06481 0.99279 1.03113 1.83651 1.54719 1.33142 0.99592 0.92347 0.92572 0.92558 0.89954 0.92572 0.92564 0.92249 0.85172 0.89702 0.97308 0.95439 0.93046 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.12 37.16 0.34 -1.31 16 2 C -0.02 -0.28 3.30 -91.77 -0.30 -0.58 16 3 C -0.14 -1.71 9.12 37.16 0.34 -1.37 16 4 C -0.18 -3.07 5.10 -36.00 -0.18 -3.25 16 5 C -0.12 -2.37 9.75 -41.21 -0.40 -2.77 16 6 C -0.06 -1.26 4.62 -106.25 -0.49 -1.75 16 7 C 0.09 2.30 2.55 -92.93 -0.24 2.06 16 8 H 0.03 0.91 8.03 -51.93 -0.42 0.49 16 9 C -0.13 -3.18 8.80 37.15 0.33 -2.85 16 10 C -0.50 -13.88 8.30 -34.44 -0.29 -14.16 16 11 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 12 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 C -0.21 -4.23 10.04 29.04 0.29 -3.94 16 19 S 0.03 0.44 22.90 -107.50 -2.46 -2.02 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.65 8.00 -51.93 -0.42 0.24 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 24 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 28 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.03 0.64 7.75 -51.93 -0.40 0.24 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.16 3.21 7.94 -52.49 -0.42 2.79 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -28.22 279.67 -8.22 -36.44 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.87 Total: -1.85 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -0.70 Total: -28.36 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -2.46 Total: -2.02 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.22 -8.22 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.699 kcal (2) G-P(sol) polarization free energy of solvation -28.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds