Wall clock time and date at job start Mon Mar 30 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33389 * 125.20714 * 239.72079 * 4 2 1 6 6 C 1.38421 * 114.92221 * 179.85796 * 5 4 2 7 7 C 1.50697 * 122.53856 * 180.20138 * 6 5 4 8 8 H 1.09000 * 109.47315 * 0.21862 * 7 6 5 9 9 C 1.52993 * 109.47313 * 120.22280 * 7 6 5 10 10 C 1.50703 * 109.46978 * 240.22232 * 7 6 5 11 11 H 1.08001 * 120.00163 * 359.97438 * 10 7 6 12 12 C 1.37882 * 119.99923 * 180.02562 * 10 7 6 13 13 N 1.31512 * 119.99906 * 359.97438 * 12 10 7 14 14 Si 1.86804 * 119.99988 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47034 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46913 * 119.99759 * 14 12 10 17 17 H 1.48496 * 109.46803 * 240.00085 * 14 12 10 18 18 C 1.33388 * 114.92248 * 0.43107 * 6 5 4 19 19 S 1.75887 * 109.59301 * 359.77045 * 18 6 5 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.08000 * 122.53310 * 0.02562 * 5 4 2 28 28 H 1.08998 * 109.47310 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47366 * 300.00201 * 9 7 6 30 30 H 1.09000 * 109.47272 * 59.99555 * 9 7 6 31 31 H 0.97002 * 120.00205 * 180.02562 * 13 12 10 32 32 H 1.07999 * 125.20388 * 179.79343 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.8069 -1.7965 -1.2289 6 6 3.1409 -2.2763 -2.4836 7 6 4.0038 -3.4958 -2.6817 8 1 4.2899 -3.9001 -1.7107 9 6 3.2214 -4.5526 -3.4638 10 6 5.2420 -3.1153 -3.4519 11 1 5.3891 -2.0928 -3.7669 12 6 6.1865 -4.0728 -3.7555 13 7 6.0071 -5.3181 -3.3724 14 14 7.7210 -3.6013 -4.7109 15 1 7.6838 -2.1498 -5.0220 16 1 8.9243 -3.9024 -3.8945 17 1 7.7742 -4.3771 -5.9760 18 6 2.6452 -1.5748 -3.5040 19 16 1.6934 -0.2300 -2.8881 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 3.1453 -2.2673 -0.3178 28 1 3.8454 -5.4349 -3.6067 29 1 2.3258 -4.8279 -2.9067 30 1 2.9353 -4.1483 -4.4347 31 1 6.6717 -5.9917 -3.5856 32 1 2.8036 -1.7985 -4.5486 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:47 Heat of formation + Delta-G solvation = -9.371304 kcal Electronic energy + Delta-G solvation = -13151.533995 eV Core-core repulsion = 11009.215584 eV Total energy + Delta-G solvation = -2142.318411 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54709 -36.83925 -35.04800 -32.21095 -28.98023 -27.98285 -27.22495 -25.35459 -22.94577 -21.14060 -19.58023 -18.28189 -17.59292 -16.70043 -16.10226 -15.08048 -14.83275 -14.74731 -14.45044 -13.78493 -13.47177 -13.39089 -13.23233 -12.99861 -12.85964 -12.53616 -12.34690 -12.24210 -12.16625 -12.03064 -11.91644 -11.53379 -11.14288 -10.98142 -10.47974 -9.34877 -8.97387 -8.10407 -6.24385 0.26467 0.90892 1.21131 1.38942 1.40700 1.52325 2.04520 2.44173 3.16666 3.75205 4.07317 4.28876 4.45221 4.49975 4.72131 4.79377 4.81099 4.89020 4.97528 4.98521 5.10021 5.18421 5.22729 5.29392 5.40046 5.41426 5.50178 5.65164 5.72212 6.04767 6.08309 6.36386 6.84043 7.43234 8.94171 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.042161 B = 0.006997 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.967316 B = 4000.765764 C = 4115.861175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 C -0.142 4.142 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.077 4.077 7 C 0.089 3.911 8 H 0.004 0.996 9 C -0.119 4.119 10 C -0.519 4.519 11 H 0.048 0.952 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.955 3.045 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.232 4.232 19 S 0.090 5.910 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.131 0.869 28 H 0.059 0.941 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 10.939 5.138 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.280 4.280 5 C -0.187 4.187 6 C -0.088 4.088 7 C 0.068 3.932 8 H 0.022 0.978 9 C -0.177 4.177 10 C -0.557 4.557 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.780 3.220 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.203 1.203 18 C -0.367 4.367 19 S 0.354 5.646 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.149 0.851 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.369 11.951 4.430 16.431 hybrid contribution 1.972 -1.548 -0.089 2.509 sum -8.397 10.403 4.341 14.057 Atomic orbital electron populations 1.21871 0.92856 1.02195 1.02925 1.19841 0.96779 0.95940 0.92095 1.21881 1.00986 0.94181 1.02940 1.24786 1.04391 1.00466 0.98343 1.20163 1.02016 0.98442 0.98059 1.19406 0.97920 0.98948 0.92497 1.17478 0.91614 0.88959 0.95125 0.97828 1.21605 0.97199 1.00885 0.97981 1.21434 1.04464 0.94653 1.35196 0.93333 1.25724 1.00999 0.94926 0.96866 1.70016 1.36070 1.02049 1.47600 0.85554 0.79541 0.78377 0.78511 1.19487 1.20475 1.20337 1.25256 1.07587 1.01168 1.02652 1.83362 1.52455 1.30141 0.98640 0.92945 0.92613 0.89834 0.89095 0.92620 0.89757 0.93299 0.85077 0.92169 0.95769 0.95190 0.92872 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.12 71.98 0.66 -2.08 16 2 C -0.03 -0.61 3.30 -11.54 -0.04 -0.65 16 3 C -0.14 -2.89 9.12 71.98 0.66 -2.23 16 4 C -0.16 -5.20 5.10 24.59 0.13 -5.07 16 5 C -0.16 -6.08 9.75 21.22 0.21 -5.88 16 6 C -0.08 -3.43 4.62 -20.92 -0.10 -3.53 16 7 C 0.09 4.68 2.55 -12.29 -0.03 4.65 16 8 H 0.00 0.20 8.03 -2.39 -0.02 0.19 16 9 C -0.12 -5.99 8.80 71.98 0.63 -5.35 16 10 C -0.52 -29.36 8.30 25.60 0.21 -29.15 16 11 H 0.05 2.76 7.63 -2.91 -0.02 2.74 16 12 C 0.01 0.75 5.30 84.66 0.45 1.19 16 13 N -0.92 -53.54 11.32 21.45 0.24 -53.30 16 14 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 C -0.23 -9.50 10.04 66.72 0.67 -8.83 16 19 S 0.09 2.89 22.90 -56.49 -1.29 1.59 16 20 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 22 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 24 H 0.05 1.13 8.00 -2.39 -0.02 1.11 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 28 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 1.43 7.75 -2.39 -0.02 1.41 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.15 6.19 7.94 -2.91 -0.02 6.17 16 Total: -1.00 -60.97 279.67 5.49 -55.48 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.07 Total: 6.82 kcal Atomic # 6 Polarization: -60.37 SS G_CDS: 3.44 Total: -56.93 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.24 Total: -53.30 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.29 Total: 1.59 kcal Total: -60.97 5.49 -55.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.107 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds