Wall clock time and date at job start Mon Mar 30 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 H 1.09005 * 109.47057 * 305.00533 * 3 2 1 5 5 C 1.50696 * 109.47712 * 185.00268 * 3 2 1 6 6 H 1.07999 * 120.00319 * 240.00495 * 5 3 2 7 7 C 1.37885 * 119.99717 * 59.99878 * 5 3 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.50707 * 109.47003 * 65.00120 * 3 2 1 14 14 C 1.38171 * 119.99899 * 60.00306 * 13 3 2 15 15 C 1.38205 * 120.07995 * 180.02562 * 14 13 3 16 16 C 1.38521 * 120.08705 * 0.02562 * 15 14 13 17 17 F 1.35096 * 119.99991 * 179.97438 * 16 15 14 18 18 C 1.38347 * 120.00067 * 359.97438 * 16 15 14 19 19 C 1.38711 * 119.91946 * 359.71040 * 18 16 15 20 20 O 1.35897 * 120.04349 * 180.29794 * 19 18 16 21 21 H 1.08997 * 109.46748 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46964 * 299.99490 * 1 2 3 23 23 H 1.08992 * 109.47475 * 59.99643 * 1 2 3 24 24 H 1.09006 * 109.46964 * 240.00510 * 2 1 3 25 25 H 1.08997 * 109.47880 * 120.00136 * 2 1 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 27 27 H 1.07999 * 119.96352 * 0.02562 * 14 13 3 28 28 H 1.08001 * 119.95893 * 179.97438 * 15 14 13 29 29 H 1.07999 * 120.04031 * 179.97438 * 18 16 15 30 30 H 0.96702 * 113.99596 * 270.29116 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 5.4539 0.8798 -1.3361 9 14 3.0961 0.1102 -2.5708 10 1 2.8744 -1.3259 -2.2647 11 1 1.7879 0.8095 -2.6394 12 1 3.7939 0.2363 -3.8756 13 6 1.6413 2.1163 1.2878 14 6 2.0766 1.6083 2.4968 15 6 1.7116 2.2246 3.6788 16 6 0.9080 3.3526 3.6545 17 9 0.5518 3.9532 4.8109 18 6 0.4701 3.8641 2.4459 19 6 0.8418 3.2496 1.2592 20 8 0.4181 3.7535 0.0703 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8935 -0.5138 0.8899 26 1 5.8770 0.4814 -2.1127 27 1 2.7029 0.7287 2.5182 28 1 2.0526 1.8256 4.6227 29 1 -0.1567 4.7433 2.4262 30 1 -0.4259 3.3911 -0.2320 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261291285.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:27 Heat of formation + Delta-G solvation = -93.075552 kcal Electronic energy + Delta-G solvation = -15414.253774 eV Core-core repulsion = 12702.092498 eV Total energy + Delta-G solvation = -2712.161276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85914 -40.89603 -37.58455 -36.70659 -34.04860 -31.48671 -30.82367 -28.90335 -24.91415 -24.04798 -23.37978 -21.25932 -19.65188 -18.79770 -17.72443 -17.25162 -17.11608 -16.56055 -16.11381 -15.60388 -15.14379 -14.80871 -14.74646 -14.33631 -14.11764 -13.55440 -13.21764 -12.82229 -12.71130 -12.43864 -12.22185 -12.16451 -11.63792 -11.50919 -11.14079 -11.01340 -10.67104 -9.83053 -9.28082 -8.27587 -6.31257 0.21498 0.26732 1.31969 1.38593 1.48739 2.34211 2.59600 3.05377 3.08425 3.58882 3.91321 3.98816 4.09207 4.39346 4.41012 4.48172 4.59358 4.88775 4.93813 5.09217 5.09777 5.20711 5.22931 5.29800 5.39148 5.51649 5.67210 5.87500 5.91156 6.31481 6.74669 6.89080 7.32735 8.88875 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035692 B = 0.009087 C = 0.008571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.301285 B = 3080.430793 C = 3266.209515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.051 3.949 4 H 0.041 0.959 5 C -0.509 4.509 6 H 0.031 0.969 7 C 0.011 3.989 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.241 1.241 12 H -0.304 1.304 13 C -0.082 4.082 14 C -0.077 4.077 15 C -0.157 4.157 16 C 0.087 3.913 17 F -0.143 7.143 18 C -0.179 4.179 19 C 0.121 3.879 20 O -0.498 6.498 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.265 0.735 27 H 0.131 0.869 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.979 0.597 5.890 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.032 3.968 4 H 0.059 0.941 5 C -0.547 4.547 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.591 5.591 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.164 1.164 12 H -0.232 1.232 13 C -0.082 4.082 14 C -0.095 4.095 15 C -0.176 4.176 16 C 0.068 3.932 17 F -0.121 7.121 18 C -0.198 4.198 19 C 0.076 3.924 20 O -0.311 6.311 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.149 0.851 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.355 0.906 5.862 14.613 hybrid contribution 0.014 -0.437 -0.584 0.730 sum -13.341 0.469 5.278 14.355 Atomic orbital electron populations 1.21803 0.94447 1.02150 1.01933 1.21916 0.96426 0.97363 1.00593 1.18141 0.93935 0.92822 0.91861 0.94137 1.21228 0.91013 1.36828 1.05581 0.95037 1.25875 0.95835 0.96426 1.00450 1.70051 1.10908 1.47246 1.30884 0.85843 0.79805 0.79535 0.77245 1.19071 1.16446 1.23230 1.20516 0.96461 0.94673 0.96591 1.20864 0.97742 1.00190 0.90738 1.21297 1.00046 0.96073 1.00166 1.17411 1.00186 0.94438 0.81206 1.91463 1.90596 1.82918 1.47157 1.21370 1.04829 1.03347 0.90298 1.18034 0.97085 0.92193 0.85120 1.84805 1.44231 1.67214 1.34837 0.91710 0.92125 0.92516 0.94516 0.92136 0.92642 0.85132 0.82776 0.82721 0.73558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.73 71.98 0.70 -3.51 16 2 C -0.13 -4.83 4.80 30.59 0.15 -4.68 16 3 C 0.05 2.25 1.51 -12.28 -0.02 2.23 16 4 H 0.04 1.82 6.05 -2.38 -0.01 1.81 16 5 C -0.51 -28.40 8.82 25.60 0.23 -28.18 16 6 H 0.03 1.97 7.84 -2.91 -0.02 1.95 16 7 C 0.01 0.62 5.45 84.66 0.46 1.08 16 8 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 9 Si 0.95 44.06 24.41 68.60 1.67 45.73 16 10 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 11 H -0.24 -10.17 6.53 99.48 0.65 -9.52 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 13 C -0.08 -3.14 3.73 -19.76 -0.07 -3.22 16 14 C -0.08 -2.75 8.64 22.25 0.19 -2.55 16 15 C -0.16 -4.74 10.02 22.33 0.22 -4.52 16 16 C 0.09 2.59 7.30 22.36 0.16 2.76 16 17 F -0.14 -4.06 17.27 44.97 0.78 -3.28 16 18 C -0.18 -5.32 9.97 22.41 0.22 -5.10 16 19 C 0.12 4.09 6.68 22.50 0.15 4.24 16 20 O -0.50 -15.67 12.27 -92.39 -1.13 -16.80 16 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.61 7.38 -2.38 -0.02 1.59 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.52 3.22 -2.38 -0.01 1.51 16 25 H 0.06 2.29 7.22 -2.39 -0.02 2.27 16 26 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.13 4.77 7.54 -2.91 -0.02 4.75 16 28 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.41 8.28 9.06 -74.06 -0.67 7.61 16 Total: -1.00 -66.40 254.04 4.42 -61.99 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.41 Total: 12.82 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 2.39 Total: -41.45 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.30 Total: -59.01 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.13 Total: -16.80 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.78 Total: -3.28 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Total: -66.40 4.42 -61.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291285.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.091 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds