Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21808 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.41485 * 120.00024 * 180.02562 * 13 12 2 16 16 O 1.35273 * 126.19567 * 359.69234 * 15 13 12 17 17 C 1.33956 * 109.57189 * 179.88684 * 16 15 13 18 18 C 1.34785 * 109.30056 * 0.38167 * 17 16 15 19 19 C 1.38551 * 126.19594 * 180.02562 * 15 13 12 20 20 N 1.38928 * 126.85007 * 0.02562 * 19 15 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.08000 * 125.34882 * 180.15830 * 17 16 15 27 27 H 1.07995 * 126.38993 * 179.73935 * 18 17 16 28 28 H 0.96995 * 119.99516 * 359.97438 * 20 19 15 29 29 H 0.96998 * 120.00023 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8577 1.1638 -2.4117 15 6 2.6182 -0.6852 -3.5126 16 8 2.9792 -1.9864 -3.5924 17 6 3.3710 -2.2676 -4.8421 18 6 3.2811 -1.1553 -5.5981 19 6 2.7994 -0.1224 -4.7656 20 7 2.5565 1.1962 -5.1297 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.2491 -1.6316 -1.1527 26 1 3.7093 -3.2329 -5.1886 27 1 3.5317 -1.0702 -6.6451 28 1 2.2240 1.8273 -4.4726 29 1 2.7187 1.4853 -6.0413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307478777.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = -29.373522 kcal Electronic energy + Delta-G solvation = -15126.141654 eV Core-core repulsion = 12436.662668 eV Total energy + Delta-G solvation = -2689.478987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.24093 -38.56235 -35.46516 -34.46626 -32.31093 -31.07194 -29.63588 -27.93703 -25.19874 -23.14857 -21.53996 -20.44760 -19.45402 -18.15475 -16.72356 -16.04157 -15.97007 -15.73229 -15.12755 -14.26065 -14.01853 -13.65383 -13.20878 -12.77928 -12.35316 -12.14529 -11.66213 -11.52898 -11.03143 -10.93725 -10.69766 -10.27440 -10.17962 -9.25798 -8.99958 -8.96226 -8.50146 -7.94932 -7.31715 -6.07348 -4.15844 1.48731 2.67589 3.23215 3.28596 3.34769 3.37504 4.03358 4.06412 4.28180 4.50916 4.87919 5.24779 5.29416 5.46611 5.75703 6.24054 6.31294 6.88773 7.02589 7.07094 7.21460 7.48739 7.57901 7.67866 7.77384 7.98128 8.01496 8.20441 8.75279 8.83360 9.17167 9.51311 10.98826 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.046649 B = 0.006726 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.085731 B = 4162.185054 C = 4553.590137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.594 3.406 14 O -0.561 6.561 15 C -0.171 4.171 16 O -0.161 6.161 17 C 0.021 3.979 18 C -0.277 4.277 19 C 0.200 3.800 20 N -0.841 5.841 21 H 0.090 0.910 22 H 0.026 0.974 23 H 0.015 0.985 24 H 0.264 0.736 25 H 0.392 0.608 26 H 0.205 0.795 27 H 0.151 0.849 28 H 0.417 0.583 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -4.825 -14.124 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.382 3.618 14 O -0.444 6.444 15 C -0.228 4.228 16 O -0.056 6.056 17 C -0.051 4.051 18 C -0.300 4.300 19 C 0.090 3.910 20 N -0.386 5.386 21 H 0.109 0.891 22 H 0.045 0.955 23 H 0.034 0.966 24 H 0.074 0.926 25 H 0.225 0.775 26 H 0.222 0.778 27 H 0.168 0.832 28 H 0.250 0.750 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.483 -4.123 -13.637 14.666 hybrid contribution 0.429 -0.565 0.440 0.835 sum 3.912 -4.687 -13.198 14.541 Atomic orbital electron populations 1.22074 0.98397 0.99154 1.00870 1.18766 0.91080 0.94020 0.79973 0.93237 1.21238 1.32266 1.13194 0.90323 0.92042 1.24884 0.94828 0.94995 0.99019 1.69905 1.35990 1.22535 1.23792 0.86440 0.78555 0.79893 0.82163 1.20589 1.21102 1.19831 1.46418 1.64230 1.13665 1.10276 1.15273 0.78666 0.86069 0.81744 1.90722 1.54367 1.14834 1.84509 1.20643 1.22419 0.82856 0.96919 1.84161 1.65135 1.26452 1.29810 1.23976 0.99166 0.99950 0.82037 1.21324 1.14381 0.92860 1.01391 1.18194 0.94523 0.86749 0.91581 1.41792 1.74687 1.07349 1.14795 0.89122 0.95469 0.96619 0.92636 0.77506 0.77849 0.83173 0.74955 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.16 0.34 -3.44 15 2 C 0.26 7.01 2.56 -69.08 -0.18 6.84 15 3 H 0.05 1.49 7.57 -51.93 -0.39 1.10 15 4 C -0.53 -14.61 8.73 -34.44 -0.30 -14.92 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 15 7 N -0.88 -25.37 11.32 55.43 0.63 -24.74 15 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 12 N -0.70 -16.07 5.06 -57.86 -0.29 -16.36 15 13 C 0.59 13.21 7.55 -15.02 -0.11 13.09 15 14 O -0.56 -13.69 14.62 5.09 0.07 -13.61 15 15 C -0.17 -3.17 6.99 -38.23 -0.27 -3.43 15 16 O -0.16 -2.55 10.30 3.88 0.04 -2.51 15 17 C 0.02 0.24 12.03 29.51 0.35 0.59 15 18 C -0.28 -3.32 10.88 -39.71 -0.43 -3.75 15 19 C 0.20 3.13 7.32 -83.43 -0.61 2.52 15 20 N -0.84 -11.58 9.06 32.64 0.30 -11.29 15 21 H 0.09 2.51 6.07 -51.93 -0.32 2.19 15 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 15 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 25 H 0.39 8.21 8.19 -40.82 -0.33 7.87 15 26 H 0.20 1.30 8.06 -52.49 -0.42 0.88 15 27 H 0.15 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.42 6.55 6.92 -40.82 -0.28 6.26 15 29 H 0.40 3.93 8.95 -40.82 -0.37 3.56 15 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -31.94 258.00 -4.61 -36.55 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -2.92 Total: 12.78 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.30 Total: -0.78 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.63 Total: -52.39 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.11 Total: -16.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.94 -4.61 -36.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307478777.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds