Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47171 * 2 1 4 4 C 1.35647 * 117.00242 * 180.02562 * 3 2 1 5 5 C 1.38319 * 120.24349 * 359.97438 * 4 3 2 6 6 C 1.38605 * 120.02462 * 179.97438 * 5 4 3 7 7 F 1.35099 * 119.73062 * 180.02562 * 6 5 4 8 8 C 1.39118 * 120.52857 * 0.02820 * 6 5 4 9 9 C 1.50702 * 119.74610 * 179.97438 * 8 6 5 10 10 C 1.36404 * 120.50689 * 359.97438 * 8 6 5 11 11 C 1.40766 * 119.95107 * 359.70259 * 10 8 6 12 12 C 1.41095 * 120.26195 * 180.32421 * 11 10 8 13 13 H 1.07996 * 120.00191 * 204.84850 * 12 11 10 14 14 C 1.39904 * 119.99906 * 24.84280 * 12 11 10 15 15 N 1.30894 * 119.99946 * 17.63920 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 197.63280 * 14 12 11 17 17 H 1.48503 * 109.47118 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47053 * 120.00137 * 16 14 12 19 19 H 1.48497 * 109.47683 * 240.00298 * 16 14 12 20 20 H 1.08999 * 109.46819 * 300.00005 * 1 2 3 21 21 H 1.09007 * 109.47244 * 59.99693 * 1 2 3 22 22 H 1.08997 * 109.46801 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47185 * 120.00240 * 2 1 3 24 24 H 1.09000 * 109.47266 * 240.00278 * 2 1 3 25 25 H 1.07997 * 119.99152 * 0.02562 * 5 4 3 26 26 H 1.09000 * 109.47482 * 89.99636 * 9 8 6 27 27 H 1.08998 * 109.47113 * 210.00086 * 9 8 6 28 28 H 1.09008 * 109.47079 * 329.99829 * 9 8 6 29 29 H 1.07999 * 120.02949 * 179.97438 * 10 8 6 30 30 H 0.97009 * 120.00343 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.1984 0.4318 -0.0005 6 6 5.5718 0.6187 -0.0016 7 9 6.3939 -0.4534 -0.0021 8 6 6.1104 1.9013 -0.0021 9 6 7.6063 2.0841 -0.0027 10 6 5.2950 2.9948 -0.0021 11 6 3.8971 2.8290 -0.0079 12 6 3.0475 3.9555 -0.0148 13 1 2.0431 3.8767 0.3740 14 6 3.5064 5.1746 -0.5252 15 7 4.5629 5.2047 -1.2973 16 14 2.6113 6.7594 -0.1049 17 1 1.4568 6.4564 0.7787 18 1 3.5408 7.6823 0.5949 19 1 2.1250 7.3995 -1.3534 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 3.7898 -0.5679 -0.0005 26 1 7.9667 2.1279 -1.0305 27 1 7.8592 3.0117 0.5108 28 1 8.0752 1.2449 0.5112 29 1 5.7214 3.9870 -0.0021 30 1 4.8809 6.0500 -1.6515 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575695895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = -82.153766 kcal Electronic energy + Delta-G solvation = -15201.124780 eV Core-core repulsion = 12489.437109 eV Total energy + Delta-G solvation = -2711.687671 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.52261 -38.75063 -36.42118 -33.71673 -31.67441 -30.27418 -29.44648 -25.69521 -24.72621 -23.10544 -20.82120 -20.01758 -17.49166 -16.94758 -15.74768 -15.30804 -15.00363 -14.36947 -14.29971 -13.88379 -13.20513 -12.83156 -12.53698 -12.32892 -12.25438 -12.08597 -11.72049 -11.42859 -11.19214 -11.17210 -10.77599 -10.57504 -10.40301 -9.83880 -9.71905 -9.55352 -9.13635 -7.51369 -7.03006 -6.76092 -4.28741 2.56707 2.79119 3.06885 3.09150 3.14084 3.91792 4.24564 4.47784 5.34562 5.47674 5.50224 5.70354 5.73185 5.88224 5.94173 6.06557 6.20209 6.21420 6.34053 6.40709 6.56969 6.74998 6.96157 7.14252 7.31298 7.49959 7.67579 7.85888 8.11553 8.31410 8.60048 8.75418 8.96612 10.13274 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.012301 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.527015 B = 2275.618779 C = 3681.285427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.305 6.305 4 C 0.032 3.968 5 C -0.203 4.203 6 C -0.018 4.018 7 F -0.170 7.170 8 C -0.118 4.118 9 C -0.098 4.098 10 C -0.128 4.128 11 C 0.093 3.907 12 C -0.437 4.437 13 H 0.086 0.914 14 C 0.072 3.928 15 N -0.792 5.792 16 Si 0.910 3.090 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.274 1.274 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.133 0.867 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 -3.263 1.643 4.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.220 6.220 4 C -0.013 4.013 5 C -0.222 4.222 6 C -0.038 4.038 7 F -0.150 7.150 8 C -0.119 4.119 9 C -0.155 4.155 10 C -0.147 4.147 11 C 0.090 3.910 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.146 4.146 15 N -0.418 5.418 16 Si 0.735 3.265 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.200 1.200 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.182 -2.986 1.498 3.991 hybrid contribution -0.120 0.185 0.000 0.220 sum -2.302 -2.802 1.498 3.923 Atomic orbital electron populations 1.21719 0.93977 1.01633 1.03153 1.22488 0.94828 0.84531 1.00162 1.85976 1.20074 1.25847 1.90059 1.18873 0.80809 0.93460 1.08126 1.20513 0.92509 0.97458 1.11769 1.16767 0.86655 0.82179 1.18246 1.91260 1.72688 1.55386 1.95636 1.19229 0.95457 0.91931 1.05296 1.20525 0.92900 1.00990 1.01048 1.20624 0.91853 0.97277 1.04980 1.17107 0.92290 0.89136 0.92485 1.19469 1.00319 0.92741 1.34116 0.89635 1.25941 0.94823 1.01127 0.92673 1.69847 1.21302 1.28494 1.22117 0.86215 0.80369 0.80626 0.79312 1.18264 1.19680 1.19969 0.91914 0.91831 0.91459 0.93433 0.93357 0.87511 0.92508 0.92388 0.92987 0.84900 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 37.16 0.38 -1.67 16 2 C 0.06 0.98 5.46 37.16 0.20 1.19 16 3 O -0.30 -7.01 9.42 -18.64 -0.18 -7.18 16 4 C 0.03 0.80 6.72 -38.36 -0.26 0.55 16 5 C -0.20 -4.78 9.01 -39.42 -0.36 -5.14 16 6 C -0.02 -0.44 7.25 -39.12 -0.28 -0.73 16 7 F -0.17 -3.90 16.44 2.25 0.04 -3.86 16 8 C -0.12 -2.82 5.85 -104.96 -0.61 -3.44 16 9 C -0.10 -1.94 9.81 36.01 0.35 -1.59 16 10 C -0.13 -3.28 8.25 -39.29 -0.32 -3.60 16 11 C 0.09 2.48 5.58 -106.67 -0.60 1.88 16 12 C -0.44 -11.58 8.72 -37.88 -0.33 -11.91 16 13 H 0.09 2.25 7.65 -52.49 -0.40 1.85 16 14 C 0.07 1.78 5.14 -17.33 -0.09 1.69 16 15 N -0.79 -20.00 10.97 55.55 0.61 -19.39 16 16 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.79 7.67 -51.93 -0.40 0.39 16 24 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 25 H 0.11 2.24 6.30 -52.49 -0.33 1.91 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 28 H 0.05 0.96 7.62 -51.92 -0.40 0.57 16 29 H 0.13 3.45 6.17 -52.49 -0.32 3.12 16 30 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 261.83 15.07 3.95 3.95 Total: -1.00 -27.86 261.83 -6.02 -33.88 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.49 Total: 1.93 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.91 Total: -22.76 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.61 Total: -19.39 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.18 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.86 -6.02 -33.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575695895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.274 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds