Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.47171 * 2 1 4 4 C 1.35647 * 117.00242 * 180.02562 * 3 2 1 5 5 C 1.38319 * 120.24349 * 359.97438 * 4 3 2 6 6 C 1.38605 * 120.02462 * 179.97438 * 5 4 3 7 7 F 1.35099 * 119.73062 * 180.02562 * 6 5 4 8 8 C 1.39118 * 120.52857 * 0.02820 * 6 5 4 9 9 C 1.50702 * 119.74610 * 179.97438 * 8 6 5 10 10 C 1.36404 * 120.50689 * 359.97438 * 8 6 5 11 11 C 1.40766 * 119.95107 * 359.70259 * 10 8 6 12 12 C 1.41095 * 120.26195 * 180.32421 * 11 10 8 13 13 H 1.07996 * 120.00191 * 204.84850 * 12 11 10 14 14 C 1.39904 * 119.99906 * 24.84280 * 12 11 10 15 15 N 1.30894 * 119.99946 * 17.63920 * 14 12 11 16 16 Si 1.86801 * 120.00137 * 197.63280 * 14 12 11 17 17 H 1.48503 * 109.47118 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47053 * 120.00137 * 16 14 12 19 19 H 1.48497 * 109.47683 * 240.00298 * 16 14 12 20 20 H 1.08999 * 109.46819 * 300.00005 * 1 2 3 21 21 H 1.09007 * 109.47244 * 59.99693 * 1 2 3 22 22 H 1.08997 * 109.46801 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47185 * 120.00240 * 2 1 3 24 24 H 1.09000 * 109.47266 * 240.00278 * 2 1 3 25 25 H 1.07997 * 119.99152 * 0.02562 * 5 4 3 26 26 H 1.09000 * 109.47482 * 89.99636 * 9 8 6 27 27 H 1.08998 * 109.47113 * 210.00086 * 9 8 6 28 28 H 1.09008 * 109.47079 * 329.99829 * 9 8 6 29 29 H 1.07999 * 120.02949 * 179.97438 * 10 8 6 30 30 H 0.97009 * 120.00343 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3512 1.5251 -0.0005 5 6 4.1984 0.4318 -0.0005 6 6 5.5718 0.6187 -0.0016 7 9 6.3939 -0.4534 -0.0021 8 6 6.1104 1.9013 -0.0021 9 6 7.6063 2.0841 -0.0027 10 6 5.2950 2.9948 -0.0021 11 6 3.8971 2.8290 -0.0079 12 6 3.0475 3.9555 -0.0148 13 1 2.0431 3.8767 0.3740 14 6 3.5064 5.1746 -0.5252 15 7 4.5629 5.2047 -1.2973 16 14 2.6113 6.7594 -0.1049 17 1 1.4568 6.4564 0.7787 18 1 3.5408 7.6823 0.5949 19 1 2.1250 7.3995 -1.3534 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 3.7898 -0.5679 -0.0005 26 1 7.9667 2.1279 -1.0305 27 1 7.8592 3.0117 0.5108 28 1 8.0752 1.2449 0.5112 29 1 5.7214 3.9870 -0.0021 30 1 4.8809 6.0500 -1.6515 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575695895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = -96.839074 kcal Electronic energy + Delta-G solvation = -15201.761583 eV Core-core repulsion = 12489.437109 eV Total energy + Delta-G solvation = -2712.324474 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.37855 -40.52791 -38.19142 -35.59262 -33.24223 -31.82678 -31.30884 -27.51264 -26.54509 -24.61118 -22.57044 -21.81848 -19.31547 -18.81717 -17.54194 -16.88865 -16.75789 -16.14566 -16.06576 -15.66109 -14.91102 -14.58467 -14.15796 -13.85965 -13.79571 -13.53894 -13.32473 -13.09307 -12.84967 -12.78177 -12.37665 -12.13385 -12.05074 -11.64553 -11.51730 -11.23508 -10.97408 -9.43058 -8.89879 -8.61162 -6.25101 0.69503 0.89716 1.40743 1.46788 1.56193 2.22633 2.58966 2.69182 3.50922 3.87288 4.06527 4.11626 4.28848 4.30531 4.41065 4.54869 4.72921 4.84278 4.86675 4.99223 5.08190 5.12088 5.25216 5.25895 5.44802 5.61961 5.79024 5.93264 6.21696 6.43449 6.69828 6.82831 7.11633 8.30610 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.012301 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.527015 B = 2275.618779 C = 3681.285427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 O -0.326 6.326 4 C 0.022 3.978 5 C -0.204 4.204 6 C -0.029 4.029 7 F -0.163 7.163 8 C -0.125 4.125 9 C -0.094 4.094 10 C -0.145 4.145 11 C 0.060 3.940 12 C -0.470 4.470 13 H 0.075 0.925 14 C 0.035 3.965 15 N -0.818 5.818 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.260 1.260 19 H -0.265 1.265 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.131 0.869 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -3.403 1.783 4.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 O -0.241 6.241 4 C -0.023 4.023 5 C -0.224 4.224 6 C -0.049 4.049 7 F -0.142 7.142 8 C -0.127 4.127 9 C -0.151 4.151 10 C -0.165 4.165 11 C 0.057 3.943 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.444 5.444 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.185 1.185 19 H -0.190 1.190 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.122 0.878 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.516 -3.153 1.634 4.352 hybrid contribution -0.024 0.107 -0.066 0.128 sum -2.539 -3.045 1.569 4.264 Atomic orbital electron populations 1.21749 0.91099 1.03971 1.02938 1.22905 0.97151 0.82263 1.00818 1.85950 1.19002 1.29285 1.89907 1.18996 0.82035 0.93379 1.07921 1.20746 0.92365 0.98307 1.10968 1.16955 0.87100 0.82568 1.18251 1.91271 1.72438 1.54900 1.95597 1.19607 0.97551 0.91442 1.04061 1.20559 0.90166 1.02271 1.02088 1.20593 0.91898 0.97466 1.06495 1.17533 0.93158 0.90318 0.93280 1.19599 1.00220 0.94173 1.35863 0.90682 1.26743 0.95585 1.03829 0.91837 1.69870 1.22322 1.29930 1.22306 0.85142 0.79072 0.76221 0.79216 1.18463 1.18456 1.19016 0.91971 0.92221 0.87778 0.92459 0.92821 0.85105 0.91487 0.91144 0.91577 0.85814 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 10.28 71.98 0.74 -2.89 16 2 C 0.04 1.49 5.46 71.98 0.39 1.88 16 3 O -0.33 -15.11 9.42 -89.62 -0.84 -15.95 16 4 C 0.02 1.10 6.72 23.06 0.15 1.26 16 5 C -0.20 -9.53 9.01 22.38 0.20 -9.33 16 6 C -0.03 -1.36 7.25 22.57 0.16 -1.20 16 7 F -0.16 -7.18 16.44 44.97 0.74 -6.44 16 8 C -0.13 -5.98 5.85 -20.08 -0.12 -6.09 16 9 C -0.09 -3.61 9.81 71.24 0.70 -2.91 16 10 C -0.14 -7.57 8.25 22.46 0.19 -7.38 16 11 C 0.06 3.29 5.58 -21.19 -0.12 3.17 16 12 C -0.47 -25.54 8.72 23.37 0.20 -25.33 16 13 H 0.08 4.09 7.65 -2.91 -0.02 4.06 16 14 C 0.04 1.76 5.14 85.24 0.44 2.20 16 15 N -0.82 -41.69 10.97 21.82 0.24 -41.45 16 16 Si 0.98 37.78 29.59 68.60 2.03 39.81 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 24 H 0.05 1.75 7.66 -2.39 -0.02 1.73 16 25 H 0.13 5.30 6.30 -2.91 -0.02 5.29 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 28 H 0.07 2.32 7.62 -2.38 -0.02 2.30 16 29 H 0.12 6.57 6.17 -2.91 -0.02 6.56 16 30 H 0.29 13.26 8.30 -92.70 -0.77 12.49 16 Total: -1.00 -59.87 261.83 6.25 -53.63 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.14 Total: 17.04 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 2.94 Total: -46.63 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.24 Total: -41.45 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.84 Total: -15.95 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.74 Total: -6.44 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -59.87 6.25 -53.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575695895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.214 kcal (2) G-P(sol) polarization free energy of solvation -59.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds