Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.46775 * 2 1 4 4 C 1.35645 * 116.99729 * 174.48120 * 3 2 1 5 5 C 1.38319 * 120.25003 * 5.52231 * 4 3 2 6 6 C 1.38599 * 120.02881 * 180.02562 * 5 4 3 7 7 F 1.35096 * 119.73334 * 180.02562 * 6 5 4 8 8 C 1.39122 * 120.53032 * 0.02562 * 6 5 4 9 9 C 1.36412 * 120.50405 * 359.97438 * 8 6 5 10 10 C 1.50700 * 120.02487 * 180.02562 * 9 8 6 11 11 C 1.40767 * 119.95254 * 0.02562 * 9 8 6 12 12 C 1.41094 * 120.25914 * 180.02562 * 11 9 8 13 13 H 1.07994 * 120.00017 * 315.50915 * 12 11 9 14 14 C 1.39905 * 119.99858 * 135.51111 * 12 11 9 15 15 N 1.30900 * 119.99959 * 156.78391 * 14 12 11 16 16 Si 1.86797 * 120.00299 * 336.77797 * 14 12 11 17 17 H 1.48501 * 109.46693 * 95.58095 * 16 14 12 18 18 H 1.48497 * 109.47566 * 215.58519 * 16 14 12 19 19 H 1.48504 * 109.46927 * 335.58480 * 16 14 12 20 20 H 1.09003 * 109.46898 * 184.53301 * 1 2 3 21 21 H 1.09003 * 109.47362 * 304.52377 * 1 2 3 22 22 H 1.08991 * 109.47848 * 64.52701 * 1 2 3 23 23 H 1.08999 * 109.46955 * 239.99732 * 2 1 3 24 24 H 1.08999 * 109.47176 * 119.99342 * 2 1 3 25 25 H 1.07995 * 119.98098 * 0.02562 * 5 4 3 26 26 H 1.07999 * 119.74785 * 180.27877 * 8 6 5 27 27 H 1.09003 * 109.47320 * 89.99733 * 10 9 8 28 28 H 1.09007 * 109.46694 * 209.99764 * 10 9 8 29 29 H 1.09001 * 109.46888 * 329.99199 * 10 9 8 30 30 H 0.96999 * 120.00209 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3457 1.5269 0.1162 5 6 4.1977 0.4373 0.1134 6 6 5.5656 0.6261 0.2330 7 9 6.3923 -0.4424 0.2290 8 6 6.0941 1.9070 0.3571 9 6 5.2738 2.9969 0.3624 10 6 5.8579 4.3796 0.4969 11 6 3.8813 2.8292 0.2423 12 6 3.0269 3.9520 0.2465 13 1 3.1771 4.7421 0.9673 14 6 1.9853 4.0419 -0.6831 15 7 0.9444 4.7939 -0.4291 16 14 2.0798 3.0889 -2.2869 17 1 1.3496 1.8039 -2.1428 18 1 1.4634 3.8891 -3.3754 19 1 3.5016 2.8159 -2.6174 20 1 -0.3633 -1.0245 0.0812 21 1 -0.3634 0.5824 0.8467 22 1 -0.3634 0.4419 -0.9276 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 3.7969 -0.5610 0.0180 26 1 7.1622 2.0398 0.4449 27 1 6.0791 4.7785 -0.4931 28 1 5.1410 5.0296 0.9986 29 1 6.7759 4.3308 1.0825 30 1 0.2223 4.8565 -1.0737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575696829.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = -88.044811 kcal Electronic energy + Delta-G solvation = -15616.640534 eV Core-core repulsion = 12904.697408 eV Total energy + Delta-G solvation = -2711.943126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.53082 -40.82340 -38.32450 -35.31824 -33.12859 -32.66143 -30.98329 -28.15096 -26.34112 -24.30860 -22.96257 -21.55514 -19.51928 -18.74867 -17.57482 -17.31126 -16.77066 -16.48712 -16.21819 -15.62240 -14.99899 -14.78851 -14.26326 -14.05170 -13.82539 -13.75383 -13.41733 -13.08898 -12.80146 -12.69038 -12.27863 -12.19637 -12.00811 -11.88903 -11.50118 -11.23671 -10.86073 -9.38522 -8.95320 -8.72315 -6.29324 0.47543 0.69668 1.30119 1.38500 1.47023 2.25042 2.59190 2.63285 3.26320 3.65854 4.00689 4.05980 4.20866 4.25873 4.36736 4.48292 4.66828 4.82489 4.86182 4.92657 4.99698 5.03490 5.19022 5.34538 5.41274 5.49803 5.64441 5.83290 6.09316 6.38226 6.52591 6.86709 7.03810 8.34239 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.014987 C = 0.010318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.605971 B = 1867.827750 C = 2713.044690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 O -0.315 6.315 4 C 0.047 3.953 5 C -0.217 4.217 6 C 0.013 3.987 7 F -0.157 7.157 8 C -0.148 4.148 9 C -0.128 4.128 10 C -0.085 4.085 11 C 0.040 3.960 12 C -0.484 4.484 13 H 0.067 0.933 14 C 0.081 3.919 15 N -0.851 5.851 16 Si 0.937 3.063 17 H -0.243 1.243 18 H -0.281 1.281 19 H -0.272 1.272 20 H 0.108 0.892 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -7.416 -1.212 7.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 O -0.230 6.230 4 C 0.001 3.999 5 C -0.237 4.237 6 C -0.007 4.007 7 F -0.136 7.136 8 C -0.167 4.167 9 C -0.129 4.129 10 C -0.142 4.142 11 C 0.037 3.963 12 C -0.513 4.513 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.478 5.478 16 Si 0.761 3.239 17 H -0.167 1.167 18 H -0.208 1.208 19 H -0.197 1.197 20 H 0.126 0.874 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.155 0.845 26 H 0.158 0.842 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.024 -7.176 -1.261 7.562 hybrid contribution -0.062 -0.519 -0.532 0.746 sum 1.962 -7.695 -1.792 8.141 Atomic orbital electron populations 1.21783 0.91859 1.03963 1.02503 1.22956 0.96890 0.82416 1.01380 1.86165 1.19424 1.29135 1.88267 1.19177 0.82496 0.93440 1.04738 1.20918 0.92638 0.98872 1.11228 1.17222 0.87144 0.83408 1.12960 1.91345 1.71923 1.55170 1.95201 1.20531 1.00526 0.90259 1.05382 1.19796 0.91496 0.96252 1.05384 1.20486 0.99860 0.92019 1.01792 1.17361 0.92417 0.90427 0.96064 1.18898 1.10626 1.05136 1.16656 0.91537 1.26262 0.91977 0.93645 1.01490 1.69803 1.05796 1.36190 1.36045 0.85894 0.79557 0.80360 0.78073 1.16689 1.20779 1.19675 0.87384 0.92442 0.92917 0.92257 0.91472 0.84453 0.84195 0.91608 0.92664 0.90444 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 10.28 71.98 0.74 -3.40 16 2 C 0.04 1.32 5.33 71.98 0.38 1.70 16 3 O -0.31 -14.37 5.89 -89.60 -0.53 -14.90 16 4 C 0.05 2.21 5.26 23.06 0.12 2.33 16 5 C -0.22 -9.11 9.00 22.38 0.20 -8.91 16 6 C 0.01 0.52 7.31 22.57 0.17 0.68 16 7 F -0.16 -6.06 17.26 44.97 0.78 -5.29 16 8 C -0.15 -5.94 9.58 22.06 0.21 -5.73 16 9 C -0.13 -5.62 5.90 -19.67 -0.12 -5.74 16 10 C -0.09 -3.17 9.61 71.24 0.68 -2.49 16 11 C 0.04 2.01 4.62 -21.19 -0.10 1.91 16 12 C -0.48 -26.55 8.34 23.37 0.20 -26.36 16 13 H 0.07 3.89 7.05 -2.91 -0.02 3.87 16 14 C 0.08 4.36 4.80 85.24 0.41 4.77 16 15 N -0.85 -47.14 13.93 21.82 0.30 -46.83 16 16 Si 0.94 43.94 25.05 68.60 1.72 45.66 16 17 H -0.24 -10.80 6.25 99.48 0.62 -10.18 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 20 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.06 1.87 7.75 -2.39 -0.02 1.85 16 24 H 0.07 2.08 7.59 -2.39 -0.02 2.06 16 25 H 0.14 4.98 6.34 -2.91 -0.02 4.96 16 26 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 2.22 6.54 -2.38 -0.02 2.20 16 29 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 30 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 Total: -1.00 -59.85 254.90 6.22 -53.63 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.05 Total: 8.96 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.90 Total: -41.23 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.30 Total: -46.83 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.53 Total: -14.90 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.78 Total: -5.29 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.72 Total: 45.66 kcal Total: -59.85 6.22 -53.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575696829.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.413 kcal (2) G-P(sol) polarization free energy of solvation -59.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds