Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.40015 * 126.26097 * 269.69108 * 11 10 9 13 13 N 1.23650 * 109.31819 * 179.79001 * 12 11 10 14 14 N 1.40028 * 109.31651 * 0.46884 * 13 12 11 15 15 C 1.46492 * 126.25934 * 179.71901 * 14 13 12 16 16 C 1.52995 * 117.50182 * 8.59601 * 15 14 13 17 17 C 1.53002 * 60.00156 * 252.50718 * 16 15 14 18 18 C 1.35049 * 126.25770 * 89.99740 * 11 10 9 19 19 O 1.21824 * 126.79973 * 0.02562 * 18 11 10 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09006 * 115.55093 * 154.30065 * 15 14 13 26 26 H 1.08998 * 117.50241 * 359.97438 * 16 15 14 27 27 H 1.09002 * 117.50215 * 145.01910 * 16 15 14 28 28 H 1.08993 * 117.49715 * 252.50888 * 17 16 15 29 29 H 1.08998 * 117.51500 * 107.47621 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 7 1.1042 -5.6508 1.1305 13 7 0.5073 -6.6721 0.7707 14 7 0.4778 -6.7228 -0.6284 15 6 -0.1309 -7.7760 -1.4446 16 6 -0.9741 -8.8298 -0.7240 17 6 0.4044 -9.1993 -1.2754 18 6 1.1128 -5.6228 -1.0875 19 8 1.2903 -5.3159 -2.2530 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 -0.4485 -7.4731 -2.4424 26 1 -1.0756 -8.7398 0.3575 27 1 -1.8468 -9.2203 -1.2475 28 1 0.4386 -9.8328 -2.1616 29 1 1.2098 -9.3519 -0.5569 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589259630.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = 79.449873 kcal Electronic energy + Delta-G solvation = -14931.860786 eV Core-core repulsion = 12279.393487 eV Total energy + Delta-G solvation = -2652.467299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.92328 -39.22018 -38.56977 -36.53551 -34.74038 -33.37283 -31.69093 -27.39524 -25.84584 -24.40073 -23.37809 -22.83413 -22.25052 -19.03804 -18.65425 -18.05752 -17.45075 -17.23455 -16.52404 -15.75155 -15.39482 -14.81013 -14.73519 -14.50376 -14.12683 -13.94063 -13.53056 -13.08227 -12.91576 -12.54445 -12.44399 -12.24522 -12.01812 -11.88862 -11.47318 -11.38592 -10.80130 -10.63668 -10.17521 -8.26165 -6.39560 0.00161 0.11924 1.14474 1.42520 1.43186 1.56821 1.80700 2.40020 2.63199 3.01469 3.09162 3.57713 3.83060 3.92520 4.09159 4.34706 4.40398 4.49096 4.62227 4.72236 4.76462 5.01125 5.12512 5.18120 5.35816 5.41856 5.71275 6.04455 6.50130 6.67471 6.76085 7.31027 8.86997 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.063681 B = 0.005592 C = 0.005547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.582703 B = 5005.661000 C = 5046.353681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.018 3.982 10 C 0.163 3.837 11 N -0.461 5.461 12 N 0.016 4.984 13 N 0.019 4.981 14 N -0.439 5.439 15 C 0.056 3.944 16 C -0.145 4.145 17 C -0.161 4.161 18 C 0.632 3.368 19 O -0.564 6.564 20 H 0.265 0.735 21 H 0.001 0.999 22 H -0.017 1.017 23 H 0.098 0.902 24 H 0.118 0.882 25 H 0.154 0.846 26 H 0.105 0.895 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -17.026 -0.284 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.097 0.903 9 C -0.020 4.020 10 C 0.044 3.956 11 N -0.291 5.291 12 N 0.019 4.981 13 N 0.022 4.978 14 N -0.269 5.269 15 C -0.045 4.045 16 C -0.183 4.183 17 C -0.199 4.199 18 C 0.330 3.670 19 O -0.436 6.436 20 H 0.074 0.926 21 H 0.019 0.981 22 H 0.002 0.998 23 H 0.116 0.884 24 H 0.136 0.864 25 H 0.171 0.829 26 H 0.124 0.876 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.693 -16.975 -0.023 16.989 hybrid contribution 0.077 1.375 -0.736 1.561 sum 0.770 -15.600 -0.758 15.638 Atomic orbital electron populations 1.70131 1.08187 1.28045 1.51017 1.26055 0.95754 1.03811 0.94232 0.85242 0.79314 0.77933 0.77600 1.17702 1.20795 1.20305 1.21480 0.94175 0.90750 1.51501 0.90282 1.19309 0.94615 0.92853 0.95269 1.22058 0.93376 0.75082 1.05056 1.50742 1.52819 1.23120 1.02418 1.79573 1.07587 0.99087 1.11814 1.79431 1.12165 1.13017 0.93204 1.49849 1.52049 1.22241 1.02768 1.22271 1.05505 0.81577 0.95154 1.23528 0.96105 0.96779 1.01874 1.23621 0.97789 0.93589 1.04914 1.17157 0.81903 0.82231 0.85725 1.91074 1.63726 1.73723 1.15061 0.92622 0.98086 0.99843 0.88380 0.86420 0.82850 0.87627 0.84068 0.84352 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.90 15 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 15 3 Si 0.98 43.53 29.54 68.60 2.03 45.55 15 4 H -0.25 -10.52 7.11 99.48 0.71 -9.81 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 15 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 15 9 C 0.02 0.95 5.30 29.85 0.16 1.11 15 10 C 0.16 6.81 6.33 86.38 0.55 7.36 15 11 N -0.46 -18.53 3.62 -477.65 -1.73 -20.26 15 12 N 0.02 0.59 13.55 37.02 0.50 1.09 15 13 N 0.02 0.60 12.98 37.02 0.48 1.09 15 14 N -0.44 -14.15 3.95 -456.95 -1.80 -15.96 15 15 C 0.06 1.26 6.84 44.99 0.31 1.57 15 16 C -0.15 -2.13 10.19 30.59 0.31 -1.82 15 17 C -0.16 -2.40 10.46 30.60 0.32 -2.08 15 18 C 0.63 25.61 8.77 178.88 1.57 27.18 15 19 O -0.56 -26.00 17.83 -4.74 -0.08 -26.08 15 20 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 21 H 0.00 0.04 8.14 -2.39 -0.02 0.02 15 22 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 15 23 H 0.10 3.99 8.12 -2.39 -0.02 3.97 15 24 H 0.12 4.27 8.14 -2.39 -0.02 4.25 15 25 H 0.15 3.28 8.14 -2.38 -0.02 3.26 15 26 H 0.11 1.73 7.84 -2.39 -0.02 1.71 15 27 H 0.14 1.25 8.14 -2.39 -0.02 1.23 15 28 H 0.14 1.31 8.14 -2.39 -0.02 1.29 15 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 15 Total: -1.00 -70.40 267.52 4.74 -65.67 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 1.15 Total: 1.73 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 3.91 Total: 4.07 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.27 Total: -90.94 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.08 Total: -26.08 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -70.40 4.74 -65.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589259630.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.118 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds