Wall clock time and date at job start Mon Mar 30 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00281 * 3 2 1 5 5 H 1.48499 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46952 * 120.00516 * 3 2 1 7 7 C 1.37873 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00583 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46878 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72354 * 12 11 10 15 15 C 1.39868 * 119.99895 * 180.27593 * 14 12 11 16 16 N 1.33638 * 125.60239 * 180.02562 * 15 14 12 17 17 C 1.30857 * 109.77937 * 180.02562 * 16 15 14 18 18 N 1.34380 * 108.20223 * 359.97438 * 17 16 15 19 19 H 0.97000 * 126.76717 * 180.02562 * 18 17 16 20 20 N 1.31173 * 125.60324 * 359.69768 * 15 14 12 21 21 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47275 * 59.99703 * 9 7 2 23 23 H 1.09008 * 109.46631 * 300.00079 * 9 7 2 24 24 H 1.09004 * 109.47131 * 59.99660 * 10 9 7 25 25 H 1.08994 * 109.47339 * 299.99544 * 10 9 7 26 26 H 1.08998 * 109.46943 * 60.00477 * 11 10 9 27 27 H 1.08994 * 109.47547 * 299.99770 * 11 10 9 28 28 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 29 29 H 1.07991 * 125.89873 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0031 13 8 3.6519 -5.9110 -0.0043 14 7 2.0101 -7.4032 0.0027 15 6 2.9190 -8.4663 0.0068 16 7 2.5987 -9.7637 0.0122 17 6 3.6880 -10.4888 0.0154 18 7 4.7448 -9.6587 0.0115 19 1 5.6813 -9.9111 0.0122 20 7 4.2259 -8.3537 -0.0001 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8898 24 1 2.8726 -3.6047 0.8877 25 1 2.8711 -3.6040 -0.8922 26 1 0.8525 -5.0447 -0.8905 27 1 0.8544 -5.0450 0.8894 28 1 1.0564 -7.5805 0.0040 29 1 3.7304 -11.5679 0.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594245196.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:59 Heat of formation + Delta-G solvation = 46.035917 kcal Electronic energy + Delta-G solvation = -14355.571428 eV Core-core repulsion = 11701.655191 eV Total energy + Delta-G solvation = -2653.916237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.25499 -39.52625 -34.99743 -34.19069 -32.30199 -32.03567 -30.65154 -27.92425 -24.47163 -23.23842 -21.77083 -20.30211 -19.78780 -18.72386 -16.87668 -16.52363 -16.05957 -16.01491 -15.08758 -14.74839 -14.40496 -13.71982 -13.39950 -12.28693 -12.15990 -11.84481 -11.54802 -11.17199 -10.77644 -10.64351 -10.54760 -10.25740 -10.16466 -9.80078 -9.67649 -9.31441 -9.04751 -8.85625 -8.30375 -5.96253 -3.97675 1.48236 2.25634 2.40223 2.94481 3.22592 3.38118 3.41435 3.45380 4.29578 4.49970 4.57929 5.03862 5.39779 5.43197 5.65876 5.66247 6.02674 6.19284 6.56820 6.70428 6.77935 6.90552 7.14127 7.15337 7.71340 7.83932 8.02175 8.04049 8.27666 8.47752 9.08981 9.66141 11.15159 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.085972 B = 0.004264 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.610624 B = 6565.037479 C = 6864.885357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.131 4.131 12 C 0.510 3.490 13 O -0.486 6.486 14 N -0.633 5.633 15 C 0.443 3.557 16 N -0.561 5.561 17 C 0.275 3.725 18 N -0.486 5.486 19 H 0.443 0.557 20 N -0.291 5.291 21 H 0.260 0.740 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.424 0.576 29 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -21.350 0.037 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.135 4.135 11 C -0.171 4.171 12 C 0.297 3.703 13 O -0.354 6.354 14 N -0.289 5.289 15 C 0.073 3.927 16 N -0.295 5.295 17 C -0.025 4.025 18 N -0.206 5.206 19 H 0.289 0.711 20 N -0.128 5.128 21 H 0.070 0.930 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.262 0.738 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.982 -20.358 0.028 20.958 hybrid contribution 0.484 0.240 0.003 0.540 sum 5.466 -20.118 0.031 20.847 Atomic orbital electron populations 1.69950 1.06011 1.26660 1.51064 1.25017 0.94872 0.99248 0.95381 0.86641 0.79557 0.83049 0.78668 1.20245 1.21331 1.20251 1.21226 0.93166 0.90992 1.50336 0.92612 1.19128 0.93922 0.91310 0.97265 1.21499 0.98768 0.91240 1.01948 1.21871 0.97794 0.92921 1.04485 1.21733 0.91169 0.82461 0.74970 1.90791 1.16885 1.83256 1.44429 1.43165 1.08883 1.02630 1.74192 1.20682 0.87489 0.86905 0.97586 1.70225 1.29976 1.01013 1.28262 1.25889 0.81979 0.99131 0.95498 1.48146 1.10520 1.04318 1.57620 0.71128 1.78868 1.08171 0.95804 1.29916 0.93009 0.96471 0.96466 0.92499 0.92486 0.88636 0.88620 0.73839 0.75854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 15 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 15 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 15 10 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 15 11 C -0.13 -2.12 5.70 -27.88 -0.16 -2.28 15 12 C 0.51 8.59 7.80 -10.98 -0.09 8.51 15 13 O -0.49 -10.19 14.67 5.55 0.08 -10.11 15 14 N -0.63 -8.82 5.44 -12.82 -0.07 -8.89 15 15 C 0.44 6.60 8.83 -320.84 -2.83 3.77 15 16 N -0.56 -6.83 11.21 -14.92 -0.17 -6.99 15 17 C 0.27 2.16 13.12 -90.68 -1.19 0.97 15 18 N -0.49 -4.55 7.44 29.52 0.22 -4.33 15 19 H 0.44 2.35 8.96 -182.34 -1.63 0.72 15 20 N -0.29 -4.55 10.98 30.04 0.33 -4.22 15 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.02 0.45 8.14 -51.92 -0.42 0.03 15 24 H 0.06 1.27 8.10 -51.93 -0.42 0.85 15 25 H 0.06 1.27 8.10 -51.93 -0.42 0.85 15 26 H 0.10 1.37 8.14 -51.93 -0.42 0.94 15 27 H 0.10 1.37 8.14 -51.93 -0.42 0.94 15 28 H 0.42 4.40 8.82 -40.82 -0.36 4.04 15 29 H 0.23 0.40 8.06 -52.49 -0.42 -0.02 15 LS Contribution 263.96 15.07 3.98 3.98 Total: -1.00 -37.78 263.96 -9.34 -47.12 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.49 Total: -2.66 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.93 Total: -4.65 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 1.05 Total: -50.78 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -37.78 -9.34 -47.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594245196.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.155 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds