Wall clock time and date at job start Mon Mar 30 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00050 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00281 * 3 2 1 5 5 H 1.48499 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46952 * 120.00516 * 3 2 1 7 7 C 1.37873 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00583 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47362 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46837 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46878 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72354 * 12 11 10 15 15 C 1.39868 * 119.99895 * 180.27593 * 14 12 11 16 16 N 1.33638 * 125.60239 * 180.02562 * 15 14 12 17 17 C 1.30857 * 109.77937 * 180.02562 * 16 15 14 18 18 N 1.34380 * 108.20223 * 359.97438 * 17 16 15 19 19 H 0.97000 * 126.76717 * 180.02562 * 18 17 16 20 20 N 1.31173 * 125.60324 * 359.69768 * 15 14 12 21 21 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.47275 * 59.99703 * 9 7 2 23 23 H 1.09008 * 109.46631 * 300.00079 * 9 7 2 24 24 H 1.09004 * 109.47131 * 59.99660 * 10 9 7 25 25 H 1.08994 * 109.47339 * 299.99544 * 10 9 7 26 26 H 1.08998 * 109.46943 * 60.00477 * 11 10 9 27 27 H 1.08994 * 109.47547 * 299.99770 * 11 10 9 28 28 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 29 29 H 1.07991 * 125.89873 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0031 13 8 3.6519 -5.9110 -0.0043 14 7 2.0101 -7.4032 0.0027 15 6 2.9190 -8.4663 0.0068 16 7 2.5987 -9.7637 0.0122 17 6 3.6880 -10.4888 0.0154 18 7 4.7448 -9.6587 0.0115 19 1 5.6813 -9.9111 0.0122 20 7 4.2259 -8.3537 -0.0001 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5568 -0.8903 23 1 0.6246 -2.5571 0.8898 24 1 2.8726 -3.6047 0.8877 25 1 2.8711 -3.6040 -0.8922 26 1 0.8525 -5.0447 -0.8905 27 1 0.8544 -5.0450 0.8894 28 1 1.0564 -7.5805 0.0040 29 1 3.7304 -11.5679 0.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594245196.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:59 Heat of formation + Delta-G solvation = 20.345053 kcal Electronic energy + Delta-G solvation = -14356.685468 eV Core-core repulsion = 11701.655191 eV Total energy + Delta-G solvation = -2655.030276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.13030 -40.82406 -36.33044 -35.93948 -34.05433 -33.13099 -31.69428 -29.70231 -26.21595 -24.37631 -22.96512 -21.80118 -21.15077 -19.57310 -18.55711 -17.82669 -17.49659 -17.17935 -16.47961 -16.30579 -15.48250 -15.16693 -14.98482 -14.26885 -13.78214 -13.16977 -13.04260 -12.64603 -12.51701 -12.43842 -12.32859 -11.54428 -11.49194 -11.30205 -11.15377 -11.05611 -10.92463 -10.52319 -9.90580 -8.18783 -6.28312 0.63184 1.31645 1.33598 1.40515 1.43114 1.51296 2.15429 2.16522 2.42785 3.14199 3.55821 3.61471 4.04137 4.24635 4.26438 4.61573 4.79961 4.96771 5.09367 5.15648 5.20650 5.51924 5.56639 5.77505 5.88322 5.97993 6.29274 6.37800 6.86737 6.97244 7.20461 7.39890 8.92352 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.085972 B = 0.004264 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.610624 B = 6565.037479 C = 6864.885357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.120 4.120 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.620 5.620 15 C 0.423 3.577 16 N -0.585 5.585 17 C 0.300 3.700 18 N -0.476 5.476 19 H 0.459 0.541 20 N -0.349 5.349 21 H 0.264 0.736 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.439 0.561 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -22.891 0.046 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.159 4.159 12 C 0.304 3.696 13 O -0.406 6.406 14 N -0.275 5.275 15 C 0.053 3.947 16 N -0.319 5.319 17 C 0.002 3.998 18 N -0.198 5.198 19 H 0.309 0.691 20 N -0.187 5.187 21 H 0.073 0.927 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.280 0.720 29 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 5.150 -21.954 0.037 22.550 hybrid contribution 0.454 0.566 0.000 0.726 sum 5.604 -21.388 0.038 22.110 Atomic orbital electron populations 1.70053 1.07401 1.27812 1.51500 1.25890 0.95850 1.02998 0.94770 0.85569 0.78391 0.78529 0.78970 1.19535 1.20333 1.19543 1.21666 0.93331 0.92866 1.50786 0.93133 1.19014 0.94163 0.92074 0.95850 1.21197 0.97760 0.92731 1.00514 1.21692 0.97305 0.90038 1.06903 1.21611 0.90301 0.83418 0.74252 1.90774 1.18695 1.84131 1.46962 1.42809 1.09769 1.01880 1.73060 1.20865 0.87483 0.87898 0.98435 1.70254 1.31923 0.99933 1.29818 1.27090 0.80162 1.00958 0.91579 1.48010 1.11882 1.02701 1.57165 0.69140 1.78714 1.09086 0.99591 1.31327 0.92679 0.97736 0.97729 0.93960 0.93949 0.86200 0.86182 0.71968 0.69753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 15 2 C 0.00 0.18 5.46 84.65 0.46 0.64 15 3 Si 0.96 45.43 29.54 68.60 2.03 47.46 15 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 7 C -0.55 -32.31 9.11 25.60 0.23 -32.08 15 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 15 9 C 0.03 1.37 4.97 29.85 0.15 1.52 15 10 C -0.08 -3.66 4.44 30.59 0.14 -3.52 15 11 C -0.12 -3.80 5.70 29.85 0.17 -3.63 15 12 C 0.52 17.34 7.80 87.66 0.68 18.02 15 13 O -0.53 -22.92 14.67 -3.07 -0.05 -22.96 15 14 N -0.62 -16.78 5.44 -312.84 -1.70 -18.48 15 15 C 0.42 12.25 8.83 260.80 2.30 14.55 15 16 N -0.59 -12.96 11.21 -201.12 -2.25 -15.22 15 17 C 0.30 3.71 13.12 180.37 2.37 6.08 15 18 N -0.48 -7.98 7.44 -60.51 -0.45 -8.43 15 19 H 0.46 3.92 8.96 -213.10 -1.91 2.01 15 20 N -0.35 -10.80 10.98 -58.88 -0.65 -11.44 15 21 H 0.26 15.07 8.31 -92.71 -0.77 14.30 15 22 H 0.00 0.23 8.14 -2.38 -0.02 0.21 15 23 H 0.00 0.24 8.14 -2.38 -0.02 0.22 15 24 H 0.04 1.94 8.10 -2.38 -0.02 1.92 15 25 H 0.04 1.94 8.10 -2.39 -0.02 1.92 15 26 H 0.12 3.24 8.14 -2.39 -0.02 3.22 15 27 H 0.12 3.25 8.14 -2.39 -0.02 3.23 15 28 H 0.44 8.50 8.82 -92.71 -0.82 7.69 15 29 H 0.29 -0.58 8.06 -2.92 -0.02 -0.60 15 Total: -1.00 -83.99 263.96 2.17 -81.81 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -1.54 Total: 1.67 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.50 Total: 1.58 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.77 Total: -109.56 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.99 2.17 -81.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594245196.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.159 kcal (2) G-P(sol) polarization free energy of solvation -83.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds