Wall clock time and date at job start Mon Mar 30 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46491 * 109.47692 * 2 1 4 4 C 1.37098 * 120.00289 * 265.12278 * 3 2 1 5 5 H 1.08005 * 120.00360 * 146.01530 * 4 3 2 6 6 C 1.38950 * 119.99664 * 326.02299 * 4 3 2 7 7 N 1.31413 * 120.00196 * 337.63215 * 6 4 3 8 8 Si 1.86804 * 119.99841 * 157.63017 * 6 4 3 9 9 H 1.48500 * 109.47235 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46760 * 119.99836 * 8 6 4 11 11 H 1.48498 * 109.47385 * 239.99591 * 8 6 4 12 12 C 1.34783 * 120.00178 * 84.84094 * 3 2 1 13 13 O 1.21292 * 120.00058 * 180.02562 * 12 3 2 14 14 C 1.50702 * 119.99864 * 0.02562 * 12 3 2 15 15 C 1.50696 * 109.47101 * 179.97438 * 14 12 3 16 16 C 1.41378 * 126.80204 * 124.70760 * 15 14 12 17 17 C 1.35452 * 103.98564 * 179.88963 * 16 15 14 18 18 O 1.34034 * 106.44652 * 0.36751 * 17 16 15 19 19 N 1.20924 * 111.56939 * 359.75132 * 18 17 16 20 20 H 1.08994 * 109.47151 * 300.00186 * 1 2 3 21 21 H 1.09004 * 109.46924 * 60.00068 * 1 2 3 22 22 H 1.09001 * 109.47122 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47538 * 239.99717 * 2 1 3 24 24 H 1.09004 * 109.46924 * 119.99932 * 2 1 3 25 25 H 0.96998 * 119.99611 * 180.02562 * 7 6 4 26 26 H 1.09007 * 109.46551 * 299.99801 * 14 12 3 27 27 H 1.08995 * 109.46975 * 59.99700 * 14 12 3 28 28 H 1.07999 * 128.00481 * 0.02562 * 16 15 14 29 29 H 1.07999 * 126.77876 * 180.10197 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3422 1.9937 -1.1830 5 1 2.1714 3.0530 -1.3070 6 6 2.8898 1.2519 -2.2224 7 7 3.4988 0.1153 -1.9688 8 14 2.7603 1.8701 -3.9804 9 1 2.0333 3.1648 -3.9975 10 1 4.1227 2.0605 -4.5397 11 1 2.0226 0.8766 -4.8014 12 6 2.1442 2.0515 1.1625 13 8 2.5482 3.1951 1.1624 14 6 1.7828 1.3800 2.4624 15 6 2.0127 2.3374 3.6032 16 6 1.0694 2.7352 4.5783 17 6 1.7583 3.5916 5.3700 18 8 2.9956 3.6675 4.8604 19 7 3.1176 2.9665 3.8828 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 3.8814 -0.4023 -2.6944 26 1 0.7334 1.0861 2.4400 27 1 2.4050 0.4957 2.5997 28 1 0.0389 2.4258 4.6716 29 1 1.3832 4.1138 6.2377 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610115441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:18 Heat of formation + Delta-G solvation = 33.142231 kcal Electronic energy + Delta-G solvation = -15358.433244 eV Core-core repulsion = 12671.665144 eV Total energy + Delta-G solvation = -2686.768100 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.52889 -38.55718 -35.12057 -34.00672 -32.04840 -31.32880 -29.45924 -28.82818 -24.82983 -22.79140 -22.31593 -21.22926 -18.85367 -17.30285 -17.18940 -16.74113 -15.78139 -14.95961 -14.85223 -14.16932 -13.79335 -13.05857 -12.95088 -12.79811 -12.39240 -11.99301 -11.73891 -11.37410 -11.08835 -10.98316 -10.79060 -10.33517 -10.29181 -10.08437 -9.72535 -9.23979 -8.93654 -8.36384 -7.47040 -6.31220 -3.91685 1.88960 2.65968 3.16639 3.27739 3.34641 3.62754 3.91565 4.17599 4.60756 4.75295 5.00393 5.13444 5.43967 5.59774 5.65721 5.79509 5.85359 6.02961 6.09243 6.22795 6.29268 6.43020 6.52048 6.88450 7.27037 7.62116 8.26035 8.53556 8.75906 9.21590 9.43305 10.03547 10.72820 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.044574 B = 0.007488 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.015927 B = 3738.659912 C = 4065.158532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 N -0.441 5.441 4 C -0.304 4.304 5 H 0.092 0.908 6 C 0.034 3.966 7 N -0.870 5.870 8 Si 0.917 3.083 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.460 3.540 13 O -0.570 6.570 14 C -0.062 4.062 15 C 0.038 3.962 16 C -0.232 4.232 17 C -0.078 4.078 18 O 0.099 5.901 19 N -0.334 5.334 20 H 0.041 0.959 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.115 0.885 24 H 0.047 0.953 25 H 0.267 0.733 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -1.143 9.917 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.161 5.161 4 C -0.432 4.432 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.247 3.753 13 O -0.452 6.452 14 C -0.103 4.103 15 C -0.122 4.122 16 C -0.253 4.253 17 C -0.160 4.160 18 O 0.030 5.970 19 N -0.035 5.035 20 H 0.060 0.940 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.132 0.868 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.185 0.815 29 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.554 -0.696 9.216 10.783 hybrid contribution -1.044 -0.110 -0.609 1.214 sum -6.598 -0.806 8.607 10.875 Atomic orbital electron populations 1.22215 0.98215 1.00356 1.01480 1.21619 0.91732 0.85539 1.04224 1.43496 1.56101 1.11805 1.04704 1.19495 1.39798 0.95486 0.88445 0.89048 1.25324 0.94540 0.96551 1.00512 1.69934 1.32717 1.15518 1.32666 0.86021 0.78135 0.79080 0.82399 1.19210 1.20798 1.20602 1.19990 0.82843 0.88128 0.84371 1.90560 1.49576 1.18575 1.86522 1.20121 1.03344 0.96465 0.90394 1.23111 0.89702 1.00599 0.98746 1.22671 1.02062 1.03105 0.97462 1.25882 0.85910 1.02212 1.02002 1.84881 1.30181 1.50248 1.31694 1.73926 1.23832 1.05653 1.00061 0.94000 0.92378 0.93019 0.86779 0.93429 0.92311 0.88326 0.88347 0.81529 0.77285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.15 37.16 0.38 -2.52 15 2 C 0.09 2.01 5.44 -4.05 -0.02 1.99 15 3 N -0.44 -11.39 2.56 -114.81 -0.29 -11.69 15 4 C -0.30 -8.63 8.98 -14.93 -0.13 -8.77 15 5 H 0.09 2.74 7.70 -52.48 -0.40 2.33 15 6 C 0.03 0.92 4.92 -17.47 -0.09 0.84 15 7 N -0.87 -23.71 11.34 55.50 0.63 -23.08 15 8 Si 0.92 20.88 29.61 -169.99 -5.03 15.85 15 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 12 C 0.46 11.72 7.59 -10.98 -0.08 11.63 15 13 O -0.57 -16.89 15.42 5.55 0.09 -16.80 15 14 C -0.06 -1.21 4.90 -29.04 -0.14 -1.35 15 15 C 0.04 0.73 6.10 -82.10 -0.50 0.23 15 16 C -0.23 -3.29 11.12 -39.38 -0.44 -3.73 15 17 C -0.08 -0.99 12.30 29.74 0.37 -0.62 15 18 O 0.10 1.69 11.20 17.19 0.19 1.88 15 19 N -0.33 -6.99 11.46 33.42 0.38 -6.60 15 20 H 0.04 0.67 6.61 -51.93 -0.34 0.33 15 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.11 2.74 5.35 -51.93 -0.28 2.46 15 24 H 0.05 0.93 6.65 -51.93 -0.35 0.58 15 25 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 26 H 0.10 1.58 6.54 -51.92 -0.34 1.24 15 27 H 0.10 1.79 7.41 -51.93 -0.38 1.41 15 28 H 0.17 1.78 8.06 -52.49 -0.42 1.36 15 29 H 0.21 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -34.41 255.37 -3.77 -38.18 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -2.92 Total: 0.72 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.66 Total: -2.30 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.72 Total: -41.38 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.28 Total: -14.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.41 -3.77 -38.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610115441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.324 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds