Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47215 * 2 1 4 4 C 1.53004 * 109.46842 * 240.00704 * 2 1 3 5 5 C 1.50692 * 109.47426 * 64.99758 * 4 2 1 6 6 H 1.08000 * 120.00081 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00229 * 179.97438 * 5 4 2 8 8 N 1.31522 * 120.00055 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00183 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47395 * 90.00509 * 9 7 5 11 11 H 1.48508 * 109.47228 * 210.00333 * 9 7 5 12 12 H 1.48496 * 109.47429 * 330.00258 * 9 7 5 13 13 N 1.46495 * 109.47420 * 120.00721 * 2 1 3 14 14 C 1.35870 * 126.12757 * 59.99655 * 13 2 1 15 15 N 1.30161 * 109.01789 * 179.72971 * 14 13 2 16 16 C 1.35797 * 108.85711 * 0.44092 * 15 14 13 17 17 C 1.47171 * 126.24189 * 179.82615 * 16 15 14 18 18 O 1.21553 * 119.99805 * 179.68905 * 17 16 15 19 19 O 1.34786 * 120.00056 * 359.96177 * 17 16 15 20 20 C 1.35330 * 126.12567 * 239.99983 * 13 2 1 21 21 H 1.09003 * 109.46869 * 299.99384 * 1 2 3 22 22 H 1.09004 * 109.47523 * 59.99303 * 1 2 3 23 23 H 1.08997 * 109.47472 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47065 * 185.00269 * 4 2 1 25 25 H 1.09003 * 109.46792 * 304.99649 * 4 2 1 26 26 H 0.97001 * 120.00046 * 179.97438 * 8 7 5 27 27 H 1.07995 * 125.48875 * 359.97438 * 14 13 2 28 28 H 0.96707 * 116.99740 * 179.72010 * 19 17 16 29 29 H 1.07996 * 126.56948 * 359.96092 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0805 0.9747 -2.3756 7 6 1.9931 -0.4014 -3.7283 8 7 2.6763 -1.5185 -3.8513 9 14 1.4994 0.5638 -5.2495 10 1 2.5650 1.5434 -5.5817 11 1 1.3127 -0.3698 -6.3892 12 1 0.2282 1.2852 -4.9872 13 7 2.0184 -0.6907 1.1960 14 6 1.7680 -1.9829 1.5332 15 7 2.3680 -2.2520 2.6564 16 6 3.0169 -1.1388 3.0852 17 6 3.8142 -1.0162 4.3161 18 8 4.3537 0.0385 4.5882 19 8 3.9506 -2.0750 5.1390 20 6 2.7996 -0.1560 2.1630 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1263 -0.7994 -1.2057 25 1 1.6053 -1.7197 -1.2953 26 1 2.9235 -1.8413 -4.7320 27 1 1.1710 -2.6762 0.9594 28 1 4.4871 -1.9474 5.9334 29 1 3.1791 0.8545 2.1982 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695811826.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = -46.664444 kcal Electronic energy + Delta-G solvation = -14802.406306 eV Core-core repulsion = 12112.177529 eV Total energy + Delta-G solvation = -2690.228777 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.94927 -39.56599 -35.87313 -35.76366 -32.84919 -30.64064 -29.54159 -27.31471 -24.61732 -23.68795 -22.11043 -20.28593 -19.88929 -17.59632 -17.07438 -16.53413 -15.68009 -15.45905 -14.84709 -14.43804 -14.09591 -13.59744 -13.45886 -12.97528 -12.58590 -12.19469 -11.78223 -11.39566 -11.17918 -11.11770 -10.75890 -10.63515 -10.49051 -10.14639 -9.90714 -9.46807 -9.19272 -8.61085 -8.41049 -6.24801 -4.30856 1.62154 2.61908 2.91302 3.18101 3.25848 3.26923 3.46465 3.61649 4.26474 4.74150 5.10861 5.13647 5.20976 5.43154 5.55820 5.75991 5.79239 6.06152 6.31131 6.45105 6.56305 6.57613 6.71947 7.21610 7.31975 7.40628 7.70222 7.95104 8.03552 8.27207 8.73372 9.35225 10.86129 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.053682 B = 0.005575 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.464593 B = 5020.862881 C = 5060.828916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 H 0.095 0.905 4 C 0.020 3.980 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.432 5.432 14 C 0.197 3.803 15 N -0.458 5.458 16 C -0.075 4.075 17 C 0.578 3.422 18 O -0.530 6.530 19 O -0.501 6.501 20 C 0.051 3.949 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.265 0.735 27 H 0.210 0.790 28 H 0.406 0.594 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 1.504 10.084 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 H 0.113 0.887 4 C -0.018 4.018 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.110 5.110 14 C -0.087 4.087 15 N -0.176 5.176 16 C -0.203 4.203 17 C 0.423 3.577 18 O -0.420 6.420 19 O -0.310 6.310 20 C -0.092 4.092 21 H 0.063 0.937 22 H 0.107 0.893 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.263 0.737 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.099 0.895 9.953 10.211 hybrid contribution 0.223 1.246 -0.895 1.550 sum -1.876 2.141 9.058 9.494 Atomic orbital electron populations 1.22055 0.93418 1.02781 1.02291 1.22208 0.95476 0.97332 0.82886 0.88705 1.19475 0.97245 0.96181 0.88896 1.20963 1.36616 1.08859 0.90259 0.92020 1.24999 0.94737 0.94994 0.99321 1.69958 1.37665 1.20777 1.24107 0.86508 0.79010 0.79726 0.82290 1.20496 1.21051 1.19699 1.46180 1.34928 1.11510 1.18335 1.25117 1.03217 0.85563 0.94844 1.70691 1.10725 1.25741 1.10466 1.19165 1.10379 0.93027 0.97697 1.19398 0.76528 0.80323 0.81410 1.90887 1.47185 1.29548 1.74377 1.84713 1.68752 1.41141 1.36442 1.22555 0.97176 1.00125 0.89387 0.93722 0.89251 0.92180 0.95663 0.95338 0.92557 0.77336 0.73689 0.79727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.05 37.16 0.34 -1.93 15 2 C 0.12 2.12 2.98 -67.93 -0.20 1.91 15 3 H 0.09 1.58 8.07 -51.93 -0.42 1.16 15 4 C 0.02 0.44 4.44 -27.88 -0.12 0.32 15 5 C -0.53 -13.07 8.41 -34.45 -0.29 -13.36 15 6 H 0.06 1.44 7.06 -52.49 -0.37 1.07 15 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 8 N -0.89 -24.76 13.29 55.43 0.74 -24.02 15 9 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 15 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 13 N -0.43 -7.28 2.59 -111.24 -0.29 -7.57 15 14 C 0.20 3.33 11.62 -89.90 -1.04 2.29 15 15 N -0.46 -8.35 11.33 -11.05 -0.13 -8.48 15 16 C -0.08 -1.32 7.01 -83.11 -0.58 -1.90 15 17 C 0.58 9.39 8.33 34.36 0.29 9.67 15 18 O -0.53 -9.24 17.67 -19.31 -0.34 -9.58 15 19 O -0.50 -6.74 13.44 -40.73 -0.55 -7.29 15 20 C 0.05 0.84 11.22 -16.63 -0.19 0.65 15 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.09 1.43 6.95 -51.93 -0.36 1.07 15 23 H 0.06 0.89 7.94 -51.93 -0.41 0.48 15 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 25 H 0.03 0.67 8.07 -51.93 -0.42 0.25 15 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 27 H 0.21 3.02 8.06 -52.49 -0.42 2.60 15 28 H 0.41 3.11 9.11 45.56 0.42 3.53 15 29 H 0.19 2.58 8.06 -52.49 -0.42 2.15 15 LS Contribution 265.61 15.07 4.00 4.00 Total: -1.00 -30.77 265.61 -5.88 -36.65 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.39 Total: 2.15 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.91 Total: -0.81 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.32 Total: -40.07 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.89 Total: -16.87 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.77 -5.88 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695811826.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.017 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds