Wall clock time and date at job start Mon Mar 30 2020 03:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09001 * 109.46493 * 305.87556 * 3 2 1 5 5 C 1.50701 * 109.47241 * 185.87987 * 3 2 1 6 6 H 1.07999 * 120.00039 * 334.84068 * 5 3 2 7 7 C 1.37875 * 119.99807 * 154.84301 * 5 3 2 8 8 N 1.31513 * 120.00137 * 6.53966 * 7 5 3 9 9 Si 1.86797 * 119.99729 * 186.53783 * 7 5 3 10 10 H 1.48498 * 109.47239 * 179.97438 * 9 7 5 11 11 H 1.48509 * 109.47284 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47309 * 59.99851 * 9 7 5 13 13 C 1.50693 * 109.47058 * 65.87733 * 3 2 1 14 14 O 1.21235 * 120.00308 * 95.00321 * 13 3 2 15 15 C 1.47362 * 120.00124 * 275.00300 * 13 3 2 16 16 N 1.34363 * 126.73139 * 359.68390 * 15 13 3 17 17 N 1.28972 * 107.23464 * 179.83806 * 16 15 13 18 18 N 1.28712 * 109.04734 * 0.43546 * 17 16 15 19 19 C 1.46502 * 125.29440 * 179.68642 * 18 17 16 20 20 N 1.28869 * 109.40694 * 359.72328 * 18 17 16 21 21 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 22 22 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 23 23 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 25 25 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 26 26 H 0.96994 * 119.99766 * 355.13678 * 8 7 5 27 27 H 1.08993 * 109.46916 * 270.04453 * 19 18 17 28 28 H 1.09004 * 109.46900 * 30.04620 * 19 18 17 29 29 H 1.09001 * 109.46604 * 150.04557 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5933 1.9857 -0.8327 5 6 3.5400 1.4450 -0.1456 6 1 4.1145 0.5863 0.1689 7 6 4.1789 2.5436 -0.6801 8 7 3.4973 3.6371 -0.9435 9 14 6.0126 2.4790 -1.0303 10 1 6.4541 3.7777 -1.5989 11 1 6.7487 2.2150 0.2323 12 1 6.2928 1.3924 -2.0030 13 6 1.6600 2.1097 1.2967 14 8 2.4477 2.1371 2.2179 15 6 0.3310 2.7288 1.4450 16 7 -0.6387 2.7823 0.5165 17 7 -1.6385 3.4036 1.0435 18 7 -1.3340 3.7451 2.2465 19 6 -2.2096 4.4753 3.1665 20 7 -0.1387 3.3455 2.5156 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 2.5343 3.6478 -0.8283 27 1 -2.0506 5.5468 3.0460 28 1 -3.2497 4.2351 2.9457 29 1 -1.9800 4.1870 4.1923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697243463.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:08 Heat of formation + Delta-G solvation = 59.948538 kcal Electronic energy + Delta-G solvation = -15535.243395 eV Core-core repulsion = 12881.930455 eV Total energy + Delta-G solvation = -2653.312940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.46741 -40.48732 -36.62763 -36.07130 -34.33160 -34.02984 -29.97924 -29.23183 -26.95419 -25.15822 -24.14671 -22.92204 -21.19037 -19.03833 -18.68578 -18.56384 -17.41429 -16.39890 -15.81568 -15.61729 -15.17737 -15.04689 -14.41559 -14.33777 -14.09569 -14.08101 -13.15126 -12.93903 -12.67746 -12.54389 -12.29029 -12.22476 -12.12584 -11.93260 -11.48891 -11.32652 -10.98329 -10.75425 -10.43180 -8.71621 -6.42970 -0.24122 0.22716 0.95670 1.54650 1.62206 1.75725 1.82151 2.37060 2.57452 3.02686 3.17473 3.84604 4.06035 4.18508 4.24723 4.25510 4.38439 4.46911 4.58158 4.68373 4.86858 5.02834 5.07090 5.10384 5.38078 5.45842 5.85106 6.10988 6.43932 6.54125 7.06682 7.36324 8.68333 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.008821 C = 0.007948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.476019 B = 3173.498799 C = 3521.904714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C 0.001 3.999 4 H 0.053 0.947 5 C -0.592 4.592 6 H 0.057 0.943 7 C -0.027 4.027 8 N -0.930 5.930 9 Si 1.115 2.885 10 H -0.284 1.284 11 H -0.278 1.278 12 H -0.258 1.258 13 C 0.447 3.553 14 O -0.463 6.463 15 C 0.089 3.911 16 N -0.249 5.249 17 N -0.067 5.067 18 N -0.121 5.121 19 C 0.073 3.927 20 N -0.279 5.279 21 H 0.027 0.973 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.254 0.746 27 H 0.125 0.875 28 H 0.147 0.853 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 -0.557 5.745 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.019 4.019 4 H 0.070 0.930 5 C -0.629 4.629 6 H 0.075 0.925 7 C -0.226 4.226 8 N -0.566 5.566 9 Si 0.936 3.064 10 H -0.209 1.209 11 H -0.203 1.203 12 H -0.182 1.182 13 C 0.319 3.681 14 O -0.331 6.331 15 C -0.192 4.192 16 N -0.123 5.123 17 N -0.061 5.061 18 N -0.036 5.036 19 C -0.064 4.064 20 N -0.136 5.136 21 H 0.046 0.954 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.165 0.835 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.013 0.566 5.612 12.374 hybrid contribution -0.996 -0.580 0.872 1.445 sum -12.009 -0.013 6.484 13.648 Atomic orbital electron populations 1.21823 0.94803 1.01754 1.01222 1.21332 0.95742 0.93904 1.02057 1.19401 0.97235 0.95382 0.89910 0.92952 1.22083 0.91482 1.05224 1.44145 0.92518 1.27409 1.11082 0.91321 0.92773 1.70946 1.08690 1.28220 1.48783 0.82975 0.69218 0.76777 0.77438 1.20931 1.20325 1.18223 1.23495 0.79152 0.74181 0.91312 1.90371 1.49985 1.49766 1.42967 1.26748 1.00949 1.03718 0.87758 1.76192 0.97258 1.14094 1.24805 1.78763 1.20679 1.11813 0.94838 1.50810 1.08655 1.33504 1.10672 1.23232 0.93511 0.97565 0.92063 1.75166 0.97668 1.14575 1.26179 0.95378 0.92013 0.90734 0.90216 0.93305 0.93547 0.85634 0.83500 0.85148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.69 71.98 0.63 -4.31 15 2 C -0.09 -3.88 5.36 30.59 0.16 -3.72 15 3 C 0.00 0.04 1.57 -12.29 -0.02 0.02 15 4 H 0.05 2.86 6.92 -2.39 -0.02 2.84 15 5 C -0.59 -33.81 7.69 25.60 0.20 -33.61 15 6 H 0.06 3.19 7.82 -2.91 -0.02 3.17 15 7 C -0.03 -1.58 5.45 84.65 0.46 -1.11 15 8 N -0.93 -57.81 13.63 21.45 0.29 -57.51 15 9 Si 1.12 51.08 29.91 68.60 2.05 53.13 15 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 13 C 0.45 23.23 5.71 28.09 0.16 23.39 15 14 O -0.46 -26.57 17.01 -2.89 -0.05 -26.62 15 15 C 0.09 4.02 6.66 136.84 0.91 4.93 15 16 N -0.25 -10.27 10.49 -52.64 -0.55 -10.83 15 17 N -0.07 -2.27 13.22 37.02 0.49 -1.79 15 18 N -0.12 -3.55 4.39 -206.57 -0.91 -4.46 15 19 C 0.07 0.90 11.62 127.77 1.48 2.38 15 20 N -0.28 -10.97 12.17 -52.59 -0.64 -11.61 15 21 H 0.03 1.04 5.52 -2.39 -0.01 1.03 15 22 H 0.06 2.20 8.07 -2.38 -0.02 2.18 15 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.08 3.16 8.14 -2.39 -0.02 3.14 15 25 H 0.05 2.03 8.14 -2.38 -0.02 2.01 15 26 H 0.25 16.02 6.62 -92.71 -0.61 15.41 15 27 H 0.13 1.07 8.14 -2.39 -0.02 1.05 15 28 H 0.15 0.85 8.14 -2.38 -0.02 0.83 15 29 H 0.13 1.15 8.14 -2.39 -0.02 1.13 15 Total: -1.00 -76.49 258.70 5.99 -70.50 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.32 Total: 1.20 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.98 Total: -12.02 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.32 Total: -86.20 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -76.49 5.99 -70.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697243463.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.451 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds