Wall clock time and date at job start Mon Mar 30 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35711 * 126.22616 * 2 1 4 4 N 1.40801 * 126.06395 * 0.04311 * 3 2 1 5 5 C 1.40223 * 107.86704 * 180.02562 * 3 2 1 6 6 N 1.30862 * 108.36354 * 359.76142 * 5 3 2 7 7 N 1.35972 * 126.22380 * 180.02562 * 2 1 3 8 8 C 1.46491 * 126.07224 * 359.95781 * 7 2 1 9 9 C 1.50702 * 109.46957 * 90.00105 * 8 7 2 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.37101 * 120.00327 * 180.27606 * 11 9 8 13 13 H 1.08001 * 119.99426 * 0.02562 * 12 11 9 14 14 C 1.38942 * 120.00412 * 180.02562 * 12 11 9 15 15 N 1.31414 * 120.00005 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00057 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46867 * 90.00263 * 16 14 12 18 18 H 1.48501 * 109.47216 * 210.00120 * 16 14 12 19 19 H 1.48499 * 109.47135 * 330.00462 * 16 14 12 20 20 H 1.09001 * 109.46844 * 269.99779 * 1 2 3 21 21 H 1.09004 * 109.47317 * 29.99441 * 1 2 3 22 22 H 1.09004 * 109.47251 * 149.99414 * 1 2 3 23 23 H 0.96996 * 119.99702 * 359.97438 * 4 3 2 24 24 H 0.96994 * 119.99614 * 179.97438 * 4 3 2 25 25 H 1.07990 * 125.81659 * 179.97438 * 5 3 2 26 26 H 1.09004 * 109.47166 * 330.00370 * 8 7 2 27 27 H 1.09000 * 109.47767 * 210.00438 * 8 7 2 28 28 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 29 29 H 0.96996 * 120.00330 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3089 1.0948 0.0000 4 7 1.8806 2.4361 0.0009 5 6 3.6398 0.6531 -0.0006 6 7 3.6399 -0.6555 0.0042 7 7 2.3104 -1.0969 -0.0005 8 6 1.8649 -2.4924 -0.0002 9 6 1.7114 -2.9709 -1.4210 10 8 1.9510 -2.2202 -2.3431 11 7 1.3137 -4.2350 -1.6671 12 6 1.1794 -4.6721 -2.9596 13 1 1.3927 -4.0036 -3.7806 14 6 0.7688 -5.9750 -3.2133 15 7 0.5088 -6.7883 -2.2143 16 14 0.5852 -6.5703 -4.9744 17 1 1.8717 -7.1493 -5.4378 18 1 -0.4759 -7.6072 -5.0384 19 1 0.2140 -5.4275 -5.8470 20 1 -0.3633 0.0000 1.0277 21 1 -0.3634 0.8901 -0.5138 22 1 -0.3634 -0.8900 -0.5139 23 1 0.9329 2.6425 0.0011 24 1 2.5333 3.1535 0.0012 25 1 4.5154 1.2852 -0.0011 26 1 0.9069 -2.5679 0.5141 27 1 2.6025 -3.1093 0.5132 28 1 1.1223 -4.8355 -0.9298 29 1 0.2218 -7.6977 -2.3914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697720090.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:36 Heat of formation + Delta-G solvation = 13.825614 kcal Electronic energy + Delta-G solvation = -14994.638279 eV Core-core repulsion = 12339.325299 eV Total energy + Delta-G solvation = -2655.312980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03567 -40.01698 -36.13129 -35.31067 -34.02255 -33.31885 -31.47405 -28.42872 -27.15882 -26.29684 -22.44288 -21.35843 -20.58401 -19.91212 -18.07803 -17.80407 -16.79858 -16.65717 -16.24283 -15.83572 -15.64988 -15.26082 -14.82296 -14.32509 -13.62691 -13.55832 -13.50014 -13.26053 -12.89517 -12.85892 -12.48059 -12.14476 -11.62214 -11.59236 -11.55306 -10.67608 -10.09082 -9.98348 -8.52193 -7.92000 -6.01494 0.97072 1.34412 1.40283 1.52121 1.62340 1.91297 2.12059 2.27911 3.11715 3.13895 3.34844 3.81410 3.97396 4.17394 4.21918 4.32027 4.45926 4.67182 4.76582 4.99753 5.20242 5.36167 5.66455 5.88499 6.16030 6.52217 6.83672 6.89326 7.05399 7.37496 7.44251 7.99714 8.64805 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.053412 B = 0.006023 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.102725 B = 4647.943866 C = 4668.941051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.007 4.007 3 C 0.046 3.954 4 N -0.863 5.863 5 C -0.001 4.001 6 N -0.313 5.313 7 N -0.356 5.356 8 C 0.136 3.864 9 C 0.421 3.579 10 O -0.625 6.625 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.075 0.925 14 C -0.006 4.006 15 N -0.913 5.913 16 Si 0.992 3.008 17 H -0.272 1.272 18 H -0.266 1.266 19 H -0.274 1.274 20 H 0.097 0.903 21 H 0.089 0.911 22 H 0.052 0.948 23 H 0.401 0.599 24 H 0.406 0.594 25 H 0.206 0.794 26 H 0.142 0.858 27 H 0.126 0.874 28 H 0.401 0.599 29 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 11.521 7.823 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C -0.063 4.063 4 N -0.413 5.413 5 C -0.189 4.189 6 N -0.136 5.136 7 N -0.143 5.143 8 C 0.010 3.990 9 C 0.207 3.793 10 O -0.512 6.512 11 N -0.197 5.197 12 C -0.466 4.466 13 H 0.093 0.907 14 C -0.207 4.207 15 N -0.554 5.554 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.191 1.191 19 H -0.199 1.199 20 H 0.115 0.885 21 H 0.108 0.892 22 H 0.071 0.929 23 H 0.230 0.770 24 H 0.235 0.765 25 H 0.223 0.777 26 H 0.160 0.840 27 H 0.144 0.856 28 H 0.235 0.765 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.665 10.541 7.237 12.804 hybrid contribution -0.549 0.160 -0.671 0.881 sum -1.214 10.701 6.566 12.614 Atomic orbital electron populations 1.20287 0.85995 1.03361 1.03662 1.20828 0.95346 0.86297 1.11112 1.17470 0.91463 0.87013 1.10361 1.41330 1.09668 1.00541 1.89751 1.23964 0.97781 0.91906 1.05206 1.77098 0.98928 1.13489 1.24048 1.47612 1.03093 1.04867 1.58727 1.21322 1.04108 0.79228 0.94319 1.21036 0.83368 0.82988 0.91912 1.90544 1.56732 1.56412 1.47529 1.41826 1.58882 1.10521 1.08520 1.19614 1.45160 0.97089 0.84757 0.90676 1.26015 0.95803 0.95235 1.03659 1.69650 1.45250 1.07650 1.32809 0.84945 0.78471 0.77982 0.77041 1.19741 1.19077 1.19925 0.88490 0.89229 0.92935 0.77013 0.76482 0.77725 0.84007 0.85635 0.76472 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.92 9.74 71.23 0.69 -1.22 15 2 C -0.01 -0.24 6.98 41.33 0.29 0.05 15 3 C 0.05 1.38 7.22 37.60 0.27 1.65 15 4 N -0.86 -17.51 9.19 -51.73 -0.48 -17.99 15 5 C 0.00 -0.03 12.03 85.32 1.03 1.00 15 6 N -0.31 -12.34 12.57 -56.78 -0.71 -13.05 15 7 N -0.36 -13.56 3.13 -337.34 -1.06 -14.62 15 8 C 0.14 4.94 6.58 85.64 0.56 5.50 15 9 C 0.42 20.53 7.85 87.66 0.69 21.21 15 10 O -0.63 -36.61 16.01 -3.07 -0.05 -36.66 15 11 N -0.56 -28.57 5.29 -306.98 -1.62 -30.19 15 12 C -0.34 -19.15 9.68 84.04 0.81 -18.34 15 13 H 0.08 4.62 7.16 -2.91 -0.02 4.60 15 14 C -0.01 -0.34 5.50 84.92 0.47 0.13 15 15 N -0.91 -48.29 13.05 21.66 0.28 -48.01 15 16 Si 0.99 42.70 29.55 68.60 2.03 44.73 15 17 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 18 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 20 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.09 1.94 7.61 -2.38 -0.02 1.92 15 22 H 0.05 1.54 7.77 -2.38 -0.02 1.53 15 23 H 0.40 6.68 8.22 -92.71 -0.76 5.92 15 24 H 0.41 6.25 8.96 -92.71 -0.83 5.42 15 25 H 0.21 4.86 8.06 -2.92 -0.02 4.83 15 26 H 0.14 4.01 7.70 -2.38 -0.02 3.99 15 27 H 0.13 4.07 8.14 -2.39 -0.02 4.05 15 28 H 0.40 18.90 7.90 -92.71 -0.73 18.17 15 29 H 0.28 13.82 8.31 -92.71 -0.77 13.05 15 Total: -1.00 -74.54 263.64 2.09 -72.44 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.11 Total: 33.36 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 4.81 Total: 9.99 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -3.59 Total: -123.85 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.05 Total: -36.66 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -74.54 2.09 -72.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697720090.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.269 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds