Wall clock time and date at job start Mon Mar 30 2020 03:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46901 * 110.99540 * 176.04541 * 12 2 1 14 14 C 1.39328 * 111.00136 * 300.00153 * 12 2 1 15 15 C 1.39399 * 120.86803 * 299.71921 * 14 12 2 16 16 C 1.37937 * 119.09381 * 179.79891 * 15 14 12 17 17 N 1.31966 * 120.88507 * 0.48797 * 16 15 14 18 18 C 1.32010 * 121.92040 * 359.74403 * 17 16 15 19 19 C 1.38087 * 120.80721 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.48607 * 179.97438 * 19 18 17 21 21 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.47220 * 60.00355 * 13 12 2 26 26 H 1.09003 * 109.46694 * 180.02562 * 13 12 2 27 27 H 1.08998 * 109.47259 * 299.99701 * 13 12 2 28 28 H 1.08005 * 120.45025 * 0.02562 * 15 14 12 29 29 H 1.08007 * 119.55505 * 180.22756 * 16 15 14 30 30 H 1.07999 * 119.59636 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5728 -0.0606 2.3582 15 6 1.9071 1.2665 2.6235 16 6 1.4414 1.8572 3.7796 17 7 0.6970 1.1805 4.6337 18 6 0.3619 -0.0788 4.4224 19 6 0.7835 -0.7418 3.2868 20 9 0.4372 -2.0307 3.0773 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7173 1.1669 -3.4844 25 1 3.9186 0.2051 1.1592 26 1 3.8208 -1.3116 2.0861 27 1 3.8029 -1.3532 0.3069 28 1 2.5194 1.8255 1.9313 29 1 1.6929 2.8861 3.9908 30 1 -0.2494 -0.5968 5.1465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699618976.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:29 Heat of formation + Delta-G solvation = 1.685499 kcal Electronic energy + Delta-G solvation = -15533.820543 eV Core-core repulsion = 12858.061167 eV Total energy + Delta-G solvation = -2675.759377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.39088 -39.96443 -37.12227 -33.15113 -30.73559 -30.46336 -29.25186 -25.78414 -24.54437 -23.25919 -22.37463 -19.99628 -17.23370 -17.04664 -16.30058 -16.08315 -15.53251 -14.87863 -14.07304 -13.96471 -13.80622 -13.23781 -13.06540 -13.00437 -12.42814 -11.96862 -11.74657 -11.17434 -11.01019 -10.79634 -10.34042 -10.30325 -10.17230 -9.44966 -9.10226 -9.08499 -8.60155 -8.55336 -7.63479 -6.13400 -4.19110 1.23015 1.37451 3.23478 3.31823 3.35779 3.89193 4.23273 4.36336 4.57303 4.74444 5.09458 5.17734 5.19525 5.61844 5.74907 5.97578 6.05572 6.11492 6.36252 6.55419 6.68243 6.78640 6.91295 7.00107 7.27849 7.58527 7.69596 7.90934 8.03803 8.13466 8.40433 8.85459 9.46383 10.93584 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043072 B = 0.008106 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.912804 B = 3453.512273 C = 3561.630763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.219 3.781 3 H 0.008 0.992 4 C -0.509 4.509 5 H 0.067 0.933 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.510 5.510 13 C 0.044 3.956 14 C 0.135 3.865 15 C -0.178 4.178 16 C 0.089 3.911 17 N -0.475 5.475 18 C 0.067 3.933 19 C 0.060 3.940 20 F -0.122 7.122 21 H 0.090 0.910 22 H 0.037 0.963 23 H 0.003 0.997 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.157 0.843 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 0.250 9.371 9.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.115 3.885 3 H 0.026 0.974 4 C -0.547 4.547 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.232 5.232 13 C -0.102 4.102 14 C 0.031 3.969 15 C -0.200 4.200 16 C -0.068 4.068 17 N -0.184 5.184 18 C -0.092 4.092 19 C 0.037 3.963 20 F -0.100 7.100 21 H 0.109 0.891 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.158 0.842 29 H 0.174 0.826 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.187 0.244 9.927 10.001 hybrid contribution 0.764 -0.213 -1.772 1.942 sum 1.951 0.031 8.155 8.385 Atomic orbital electron populations 1.21825 0.97347 0.99963 1.00025 1.19438 0.92629 0.92024 0.84409 0.97431 1.21123 1.31677 1.12554 0.89391 0.91481 1.24931 0.95021 0.95028 0.99125 1.69893 1.36577 1.22840 1.23636 0.86399 0.78666 0.79563 0.82565 1.19640 1.20896 1.21031 1.59850 1.10750 1.52103 1.00532 1.22253 0.85917 0.99976 1.02070 1.19545 0.93733 0.91158 0.92495 1.22800 1.02270 0.95847 0.99127 1.22581 0.94053 0.99863 0.90269 1.67685 1.12482 1.07045 1.31188 1.22709 0.99752 0.91334 0.95360 1.18873 1.00254 0.80742 0.96432 1.91497 1.90041 1.33625 1.94872 0.89149 0.94404 0.97793 0.92806 0.95898 0.93494 0.89386 0.84216 0.82588 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.85 37.16 0.33 -2.98 16 2 C 0.22 5.39 1.85 -68.86 -0.13 5.27 16 3 H 0.01 0.21 7.21 -51.93 -0.37 -0.16 16 4 C -0.51 -13.52 7.92 -34.44 -0.27 -13.79 16 5 H 0.07 1.77 6.39 -52.49 -0.34 1.43 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 7 N -0.89 -24.71 11.33 55.43 0.63 -24.08 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.51 -11.02 4.51 -172.40 -0.78 -11.79 16 13 C 0.04 0.84 8.98 60.07 0.54 1.38 16 14 C 0.13 2.59 3.32 -83.50 -0.28 2.32 16 15 C -0.18 -3.01 8.73 -39.26 -0.34 -3.36 16 16 C 0.09 1.33 11.17 -17.60 -0.20 1.13 16 17 N -0.48 -7.46 10.36 -13.30 -0.14 -7.59 16 18 C 0.07 1.03 11.16 -17.53 -0.20 0.84 16 19 C 0.06 1.08 7.36 -39.12 -0.29 0.79 16 20 F -0.12 -2.30 17.15 2.25 0.04 -2.27 16 21 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.00 0.07 7.22 -51.93 -0.37 -0.30 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.02 0.41 7.54 -51.93 -0.39 0.02 16 26 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.09 1.74 6.23 -51.93 -0.32 1.42 16 28 H 0.14 2.30 7.21 -52.48 -0.38 1.92 16 29 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 30 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 257.42 15.07 3.88 3.88 Total: -1.00 -28.56 257.42 -5.64 -34.20 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -3.32 Total: -1.23 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.93 Total: -6.87 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.29 Total: -43.47 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.56 -5.64 -34.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699618976.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.881 kcal (2) G-P(sol) polarization free energy of solvation -28.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds